BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1468.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093563|ref|YP_001098638.1| LysR family transcriptional reg... 120 1e-28 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 89 3e-19 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 73 1e-14 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 62 3e-11 gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [H... 59 2e-10 >gi|134093563|ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 299 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 142/292 (48%), Gaps = 5/292 (1%) Query: 1 MADLTLPLNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQV 60 MA P++A+ AF AAARH SF +AA+EL +T A S +I+ LED++G LF R R V Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 LLTERGRQFFEEASPAFDILATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERY 120 LTE GR++ + A LA + V + V P+FA +PHL +F+ + Sbjct: 61 SLTEFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALH 120 Query: 121 PGIAPQVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALLQTMPL 180 P I+ + S + S D+ +R G +P+ + ++ + + VASPA L+ + Sbjct: 121 PEISIETYLSVPLYDMSLSETDIEVRFGAGKYPD-IVTEKLFREPVFPVASPAYLEQIGK 179 Query: 181 VDVSQIVGHTLLVSRSRRNDWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVDGLGLALS 240 ++V + L+ RS W W ++ GL L D + +L+AV G G+AL+ Sbjct: 180 LNVPADLQKAQLL-RSALEPWQPWFEMAGLDWQEPSTGLRIDDLGLLLEAVKHGYGVALT 238 Query: 241 PVSLADNDLRSGRLVCPFP-HLRMSLAPYYLGID--AQAGAEALLFAKWLGE 289 A + + SG +V F L YYL D + E L W+ E Sbjct: 239 RQHFAADMIASGEIVSLFDLQLTTPQHAYYLVYDRHVRERPEVALMLDWMME 290 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 7/250 (2%) Query: 11 IRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERGRQFF 70 ++ F+A +SFT A L+++ +S+ + LED+LG L R R++ LTE G ++ Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 71 EEASPAFDILATAARRVMRDA--PTRTVVINVRPSFAVRWLIPHLADFVERYPGIAPQVV 128 E + A + + A P T+ + + SF + P L +++ RYP + + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 129 TSTASVGKAGSSFDMAIRRGENNWPER-LKVQRFMEDELVLVASPALLQTMPLVDVSQIV 187 + V +D+AIR G N PE L ++ D +VL ASPA LQ + + Sbjct: 121 LADRRVDLIEDGYDLAIRVG--NLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDL 178 Query: 188 GHTLLVSRSRRNDWDDWRKLVGLKRW--RGQAMLHFDHVHFVLQAVVDGLGLALSPVSLA 245 ++ S + D+W G R R + ++ + A +DG GL P + Sbjct: 179 KQHACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 246 DNDLRSGRLV 255 +D+++GRLV Sbjct: 239 ADDVQAGRLV 248 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 6/186 (3%) Query: 11 IRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERGRQFF 70 ++ F+A + AAQ L T A+SR + LE+ L L R R++ LT+ GR F Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 71 EEASPAFDIL--ATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIAPQVV 128 ++A + A A RV R P+ + I+ F + ++PH+A+F YP I ++ Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 129 TSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALLQ--TMPLVDVSQI 186 ++ D+AIR G N L + + L L+ASP LQ MP Q+ Sbjct: 128 SNDQVADLLEHRTDIAIRIG-NLQDSTLHARALTANPLHLLASPDYLQRHGMPTTP-EQL 185 Query: 187 VGHTLL 192 GH LL Sbjct: 186 AGHQLL 191 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 12/255 (4%) Query: 8 LNAIRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERGR 67 L I AF+ A H SF AA L VT + R+I LE LG+ L R R++ LTE G Sbjct: 4 LKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGS 63 Query: 68 QFFEEASPAFDIL--ATAARRVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIAP 125 + E L A + + + ++I+ SF + + P+ +F+E++PG+ Sbjct: 64 VYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLKM 123 Query: 126 QVVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASPALL------QTMP 179 + V +DM IR G P + + + ++ V+ +P +T+ Sbjct: 124 SFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAI-KLAANKRVVCGTPDYFKKHGKPKTLD 182 Query: 180 LVDVSQIVGHTLLVSRSRRNDWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVVDGLGLAL 239 + + L + R ++ K V + R Q L + + + + +GLG+A Sbjct: 183 DLAKHNCLAFNLQGGQQRGWYFNHRGKTVSV---RAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 240 SPVSLADNDLRSGRL 254 V + L SG L Sbjct: 240 RSVWEIQSQLESGTL 254 >gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [Herminiimonas arsenicoxydans] Length = 289 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 34/263 (12%) Query: 11 IRAFLAAARHQSFTLAAQELNVTHGAISRQIKNLEDYLGMPLFERRIRQVLLTERGRQFF 70 +R F+A + SF+ AA+EL+ T IS I NLE L + LF+R R+ LTE G+ Sbjct: 1 MRVFVAVIDYGSFSKAARELHRTQSVISYTIANLEAQLNVALFDRSKRKPTLTEAGKALL 60 Query: 71 EEA-SPAFDILATAAR-RVMRDAPTRTVVINVRPSFAVRWLIPHLADFVERYPGIAPQ-- 126 +A + + A AR + + V I V F L+ L F +R+P +A + Sbjct: 61 ADARTVGLKVDAMRARAKTLAQGLEAEVSIAVDVMFPNCRLVAALQAFQQRFPTVALRLR 120 Query: 127 ----------VVTSTASVGKAGSSFDMAIRRGENNWPERLKVQRFMEDELVLVASP---- 172 V T +G AG D A + + Q ++ VA+P Sbjct: 121 IEALGAVMHLVGQRTCQIGIAGPMLDFA---------DTFQSQPAGSITMLPVAAPSHPL 171 Query: 173 ALLQTMPLVDVSQIVGHTLLVSRSRRNDWDDWRKLVGLKRWRGQAMLHFDHVHFVLQAVV 232 A ++ + ++++ +L RS ++ +V ++ WR + H +L+ Sbjct: 172 AQMEGIIPTEIARDYTQLVLTDRSELTAGQNF-GVVAVRDWR---LGDLGAKHMLLR--- 224 Query: 233 DGLGLALSPVSLADNDLRSGRLV 255 +GLG P + DL +GRLV Sbjct: 225 NGLGWGSMPEEMIREDLDTGRLV 247 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 545,511 Number of extensions: 21464 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 10 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)