BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1461.p (335 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 412 e-116 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 196 2e-51 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 169 2e-43 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 127 8e-31 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 118 4e-28 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/335 (61%), Positives = 246/335 (73%), Gaps = 2/335 (0%) Query: 1 MDKAVIPLIETRAVSRRFGQRHQGWLERQLQARGWSRPPAITHALDQVDLKVLPGEVVGL 60 M + PL+ + VS+RF Q R G + + HA+DQV L + GEVVGL Sbjct: 1 MTEHTQPLLALQDVSKRFAQP-LDTAARIANLFGAKKSAEVVHAVDQVTLTIHAGEVVGL 59 Query: 61 VGESGCGKSTLGRVACGLLDPSEGQVLVNGRDRASLTRGEEAQARLQVQMIFQNPYASLN 120 VGESGCGKSTLGR+A GL S G L G + + E Q +L +QMIFQ+PYASLN Sbjct: 60 VGESGCGKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLN 119 Query: 121 PRLRVDQIVGEAAQVNGKV-EGDLDDYVCRQLLRAGLDPALRDRYPHQFSGGQRQRIGIA 179 PR+R+ ++GEA +G V + +YV R L GLDPAL R+PHQFSGGQR RIGIA Sbjct: 120 PRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIA 179 Query: 180 RALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYLFISHDLGVVEHVSDRVV 239 RALAV+P++LVCDEAVAALDVSIQAQ+LNLF+ LR+EL LTYLFISHDLGVV HVSDRV+ Sbjct: 180 RALAVKPELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVL 239 Query: 240 IMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPGGCH 299 IMYLGR+VES+P AELF +PNHPYT ALLA PR+ +K +F A+KGEIPSPL+PP GCH Sbjct: 240 IMYLGRIVESSPTAELFARPNHPYTVALLASAPRLEVKKIDFYAVKGEIPSPLHPPSGCH 299 Query: 300 FNPRCPHATQRCREEQPLLREIAPGHMSACHLNDG 334 F+PRCPHA RC EQPLL+EIAP H SACHLND Sbjct: 300 FHPRCPHAMPRCSVEQPLLKEIAPAHFSACHLNDS 334 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/287 (40%), Positives = 158/287 (55%), Gaps = 12/287 (4%) Query: 41 ITHALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPS----EGQVLVNGRDRASL 96 + A++ V V PG+++GLVGESG GKS GL+D G++L+ +D +L Sbjct: 14 VVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDLRAL 73 Query: 97 TRGEEAQARLQ---VQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVCRQ-LL 152 + EA R++ + MIFQ+P +LNP LR+D + EA + V + R L+ Sbjct: 74 S--PEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARAMARDALV 131 Query: 153 RAGL-DPALRD-RYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLF 210 R G+ P R YPHQFSGG RQR+ IA AL +P +++CDE ALDV+IQ QIL Sbjct: 132 RVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEM 191 Query: 211 MDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAE 270 L E G ++I+HDL V+ ++D V +MY G++VES V E+ QP HPYT L+A Sbjct: 192 QKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTHGLIAS 251 Query: 271 VPRMGARKKEFTAIKGEIPSPLNPPGGCHFNPRCPHATQRCREEQPL 317 P I G PS LN P GC F RC AT C PL Sbjct: 252 SPSRNLPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPL 298 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 169 bits (429), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 168/289 (58%), Gaps = 16/289 (5%) Query: 1 MDKAVIPLIETRAVSRRFGQRHQGWLERQLQARGWSRPPAITHALDQVDLKVLPGEVVGL 60 ++++ +PL+ V F + QGW + P + A+D V ++V PGE +G+ Sbjct: 259 LNESAVPLLSAEHVRCTFDIK-QGW---------FKTTPFV--AVDDVSVQVRPGETLGI 306 Query: 61 VGESGCGKSTLGRVACGLLDPS-EGQVLVNGRDRASLTRGEEAQARLQVQMIFQNPYASL 119 VGESG GK+TLG L G + +G+ ++ R ++Q++FQ+P+ASL Sbjct: 307 VGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRARMQIVFQDPFASL 366 Query: 120 NPRLRVDQIVGEAAQVNGKVEG--DLDDYVCRQLLRAGLDPALRDRYPHQFSGGQRQRIG 177 +PR ++QIVGE ++ G + V LL GL P + RYPH+FSGGQRQRI Sbjct: 367 SPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPPDIMARYPHEFSGGQRQRIA 426 Query: 178 IARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYLFISHDLGVVEHVSDR 237 IAR L ++P +++ DE ++LDVS+Q Q+L L ++L+++ L Y+FISHDL V+ ++ R Sbjct: 427 IARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHR 486 Query: 238 VVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKG 286 V++M G+VVES + QP YTQ LLA A +E TA++ Sbjct: 487 VMVMKDGKVVESGMTQAVLSQPTEAYTQRLLA-ASVYAAADEEATAVQA 534 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 131/243 (53%), Gaps = 16/243 (6%) Query: 42 THALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSE-----GQVLVNGRDRASL 96 + ++ V + GE LVGESG GK+ A +L ++ G++L G+D L Sbjct: 16 SKVVNDVSFSIAAGEKFALVGESGSGKTV---TALSILRLNQDAAYAGRILFEGQD--IL 70 Query: 97 TRGEEAQARLQ---VQMIFQNPYASLNPRLRVDQIVGEAAQVNGKVEGDLDDYVCRQLL- 152 R E A ++ V MIFQ P +LNP + + E ++ + + +LL Sbjct: 71 QRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSARIAALRAIELLD 130 Query: 153 RAGL-DPALRD-RYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLF 210 + G+ +P R YPHQ SGGQRQR IA ALA +P++L+ DE ALDV+IQ QI+ L Sbjct: 131 KTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELL 190 Query: 211 MDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAE 270 L+ E + L I+HDL +V H +DRV +M G +VE A ELF P YT+ LLA Sbjct: 191 NQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFTAPRETYTRKLLAS 250 Query: 271 VPR 273 P+ Sbjct: 251 QPQ 253 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 127 bits (319), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 12/241 (4%) Query: 44 ALDQVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSEGQVLVNGRDRASLTRGEEAQ 103 AL+ V L+ GE+ L+G SGCGK+TL R+ GL P GQVL++G D ++ E Sbjct: 17 ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRER-- 74 Query: 104 ARLQVQMIFQNPYASLNPRLRVDQIVGEAAQVNGKV----EGDLDDYVCRQLLRAGLDPA 159 QV +FQ + +L + V + + +V E + + V + L LD Sbjct: 75 ---QVGFVFQ--HYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLD-W 128 Query: 160 LRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREELGL 219 L DRYP Q SGGQRQRI +ARALAV+P++L+ DE ALD ++ ++ L +EL + Sbjct: 129 LADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188 Query: 220 TYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKK 279 T +F++HD V+D++V+M G V + +++ P P+ L V R Sbjct: 189 TSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGNVNLFRGRVH 248 Query: 280 E 280 E Sbjct: 249 E 249 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 48/292 (16%) Query: 6 IPLIETRAVSRRFGQRHQGWLERQLQARGWSRPPAITHALDQVDLKVLPGEVVGLVGESG 65 + L+E R ++RRFG +D + L + GE L+G SG Sbjct: 1 MALLEIRNLTRRFGDNT---------------------VVDNISLSIEAGEFFTLLGPSG 39 Query: 66 CGKSTLGRVACGLLDPSEGQVLVNGRDRASLTRGEEAQARLQVQMIFQNPYASLNPRLRV 125 CGK+TL R+ G +P G++L++G D G + R+ V+ +FQN YA L P + V Sbjct: 40 CGKTTLLRMIAGFDEPDAGKILLDGVDLT----GVPPEQRV-VRTVFQN-YA-LFPHMTV 92 Query: 126 DQIVGEAAQVNGKVEGDLDDYVCRQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQ 185 + ++ + ++ V L L RYPH+ SGGQRQR+ IARAL + Sbjct: 93 AGNIAFPLEMANTPKSEIKQKVDEALEDVRL-TGFAARYPHELSGGQRQRVSIARALVTR 151 Query: 186 PQMLVCDEAVAALDVSIQAQILNLFMDLREELGLTYLFISHDLGVVEHVSDRVVIMYLGR 245 P++L+ DE ++ALD ++ Q+ ++L++E+G+T+++++HD +S R+ +M G Sbjct: 152 PKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGN 211 Query: 246 V--------VESAP----VAELFGQPN---HPYTQ----ALLAEVPRMGARK 278 + + S P VA+ G N TQ +L +VP MGA K Sbjct: 212 IEQLDEPTRIYSYPRSRFVADFIGTCNLFDGTVTQIAGDTMLLDVPGMGAVK 263 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 630,253 Number of extensions: 24758 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 46 Length of query: 335 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 253 Effective length of database: 730,157 Effective search space: 184729721 Effective search space used: 184729721 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)