BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1460.p (327 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 406 e-115 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 201 3e-53 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 181 6e-47 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 102 3e-23 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 99 3e-22 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 406 bits (1043), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/314 (63%), Positives = 245/314 (78%), Gaps = 1/314 (0%) Query: 8 VRHLRTHFFTPDGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVG 67 +++L+ HF +GV+ AV+DVS SV G+I+GLVGESGSGKS+T +SI+G++DAPG+IV Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVA 60 Query: 68 GEILFQGRDLVRMDKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQ 127 G+IL + +DL + ++R ++GNRIAMIFQDPMMTLNPVL+++ QM++AVLAH V + Sbjct: 61 GKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKA 120 Query: 128 QARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALD 187 AR +AR L +GIASP+ERL AYPHQ SGGMRQRVAIAIA+L+KPDLII DEPTTALD Sbjct: 121 TARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 180 Query: 188 VTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSP 247 VTIQ QIL E+QKL R+ GTALIWITHDLSV+AGLAD V VMYAG+IVE GSV VL+ P Sbjct: 181 VTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQP 240 Query: 248 LHPYTQGLIGSLPSNNRRATRLRQIPGMTPNLLHLPPTCAFAARCERLSQHCLTAPAISE 307 HPYT GLI S PS N LRQIPGMTP+LL+LP CAF RCER + C P +S Sbjct: 241 QHPYTHGLIASSPSRNLPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPLSI 300 Query: 308 PRPAHLVRCYHPIS 321 A +RC+HPIS Sbjct: 301 -DGARTLRCFHPIS 313 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 201 bits (512), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/255 (42%), Positives = 158/255 (61%), Gaps = 6/255 (2%) Query: 6 LDVRHLRTHFFTPDGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 L++++L+ F T V+DVS S+ G LVGESGSGK+VT SIL + Sbjct: 4 LEIQNLQVSFDTSK----VVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAA-- 57 Query: 66 VGGEILFQGRDLVRMDKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVS 125 G ILF+G+D+++ +A++R ++G +AMIFQ+PM LNP+ + Q+ + ++ H +S Sbjct: 58 YAGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLS 117 Query: 126 RQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTA 185 + A A + L GI P+ R +YPHQLSGG RQR IA+A+ KP L+IADEPTTA Sbjct: 118 ARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTA 177 Query: 186 LDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLD 245 LDVTIQ QI+ + +L R+ A++ ITHDL++V AD V VM G +VE + + Sbjct: 178 LDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFT 237 Query: 246 SPLHPYTQGLIGSLP 260 +P YT+ L+ S P Sbjct: 238 APRETYTRKLLASQP 252 Score = 153 bits (387), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 150/259 (57%), Gaps = 12/259 (4%) Query: 6 LDVRHLRTHFFTPDGVLP-----AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 L H+R F G AVDDVS+ V G LG+VGESGSGK+ G ++L + Sbjct: 267 LSAEHVRCTFDIKQGWFKTTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSS 326 Query: 61 APGRIVGGEILFQGRDLVRMDKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 A V G I F G+ L M +LR L+ R+ ++FQDP +L+P +E + + + Sbjct: 327 AR---VSGTIAFDGKPLNAMQSDALRPLRA-RMQIVFQDPFASLSPRRTIEQIVGEGLAL 382 Query: 121 HS-KVSRQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIA 179 H ++ R+ L +G+ P + + YPH+ SGG RQR+AIA ++ KPDL++ Sbjct: 383 HQPQLGAAGIRKAVADALLEVGL--PPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLL 440 Query: 180 DEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGS 239 DEPT++LDV++Q Q+L + +L +++ A I+I+HDL+V+ +A V VM G++VE G Sbjct: 441 DEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESGM 500 Query: 240 VDAVLDSPLHPYTQGLIGS 258 AVL P YTQ L+ + Sbjct: 501 TQAVLSQPTEAYTQRLLAA 519 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 181 bits (458), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 162/304 (53%), Gaps = 8/304 (2%) Query: 21 VLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRM 80 V+ AVD V+L++ G ++GLVGESG GKS G +G+ + G L++G +L + Sbjct: 40 VVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGL----HTLSSGSRLWKGVNL-EV 94 Query: 81 DKASLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARQTLGMM 140 A+ R Q + MIFQDP +LNP ++++ + +A +AH V + E + L + Sbjct: 95 SSAAERRQQQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTV 154 Query: 141 GIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQK 200 G+ R +PHQ SGG R R+ IA A+ KP+L++ DE ALDV+IQAQ+L+ K Sbjct: 155 GLDPALAR--RFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNLFIK 212 Query: 201 LARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIGSLP 260 L + ++I+HDL VV ++D V +MY GRIVE + P HPYT L+ S P Sbjct: 213 LRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLASAP 272 Query: 261 SNNRRATRLRQIPGMTPNLLHLPPTCAFAARCERLSQHC-LTAPAISEPRPAHLVRCYHP 319 + + G P+ LH P C F RC C + P + E PAH C+ Sbjct: 273 RLEVKKIDFYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLLKEIAPAHFSACHLN 332 Query: 320 ISMN 323 S N Sbjct: 333 DSSN 336 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 14/233 (6%) Query: 25 VDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKAS 84 V +S ++ RG+I L+G+SG GK+ +I G P + G I G+++ + Sbjct: 34 VHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGF--EP--LTEGSITLGGKEISNAHFTA 89 Query: 85 LRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARQTLGMMGIAS 144 E + +I ++FQD L P L V A V L +QAR A TL +G+AS Sbjct: 90 TPETR--QIGVVFQD--YALFPHLSV-ADNVGFGLRKLAAPERQARIAALLTL--VGLAS 142 Query: 145 PEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLARQ 204 ++ +PH+LSGG +QRVA+A A+ +PDL++ DEP + LDV ++ ++ SEV+ + ++ Sbjct: 143 QGKK---FPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKE 199 Query: 205 HGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDSPLHPYTQGLIG 257 GT + +THD +AD++ VM G IV+ S + P + + IG Sbjct: 200 VGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIG 252 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 99.0 bits (245), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 34/280 (12%) Query: 6 LDVRHLRTHFFTPDGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRI 65 L++R+L F G VD++SLS+ G L+G SG GK+ T ++ D P Sbjct: 4 LEIRNLTRRF----GDNTVVDNISLSIEAGEFFTLLGPSGCGKT-TLLRMIAGFDEPD-- 56 Query: 66 VGGEILFQGRDLVRMDKASLRELQGNRIAMIFQD----PMMTLNPVLKVEAQMVDAVLAH 121 G+IL G DL + + + +FQ+ P MT+ + +M + + Sbjct: 57 -AGKILLDGVDLTGVPP------EQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSE 109 Query: 122 SKVSRQQARELARQTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADE 181 K +A E R T G A+ YPH+LSGG RQRV+IA A++ +P L++ DE Sbjct: 110 IKQKVDEALEDVRLT----GFAA------RYPHELSGGQRQRVSIARALVTRPKLLLLDE 159 Query: 182 PTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVD 241 P +ALD ++ Q+ E+ L ++ G +++THD + L+ +AVM G I + Sbjct: 160 PLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPT 219 Query: 242 AVLDSPLHPYTQGLIGSLPSNNRRATR------LRQIPGM 275 + P + IG+ + T+ L +PGM Sbjct: 220 RIYSYPRSRFVADFIGTCNLFDGTVTQIAGDTMLLDVPGM 259 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 652,127 Number of extensions: 27671 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 42 Length of query: 327 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 245 Effective length of database: 730,157 Effective search space: 178888465 Effective search space used: 178888465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)