BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1459.p
         (320 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   350   5e-98
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...   121   4e-29

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  350 bits (898), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/294 (61%), Positives = 234/294 (79%)

Query: 26  QPPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAVAAPWITPQNPYDLMQLDVLDARL 85
           Q P  E+P+RR  R+F AS+ A  G V++LL+++ A+ AP I PQNPYDL Q+D++D+RL
Sbjct: 2   QSPAIETPFRRFARNFFASKIAAGGSVLLLLIVLAAIFAPVIAPQNPYDLTQIDIMDSRL 61

Query: 86  HPGTINGAGTYTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYV 145
            PG  N  G++TY LGTD QGRD++SAILYG+RIS+ +GV S  IA +IG  +GL A Y 
Sbjct: 62  APGAQNLDGSFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAIALLIGLTLGLCAGYF 121

Query: 146 GGKLDTLLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALV 205
           GG+ +  +MR AD+ LSFP ILVA+++LA +G GI  ++  L+ ++WAYYARTAR  ALV
Sbjct: 122 GGRTEGFIMRVADIQLSFPPILVALILLALMGPGIDKIVIALIAVQWAYYARTARSAALV 181

Query: 206 ERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPI 265
           ER+KEY+EAARGL LS  RI+ RH+LPNCLPPLIVI  LQVA AI+LEATLSFLGLG+P+
Sbjct: 182 ERKKEYMEAARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPV 241

Query: 266 TEPSLGLLISNGYQYMLSGEYWISFYPGITLLIVIVAINLVGDRLRDILNPRWQ 319
           TEPSLGLLI+NG+ YM+SG+YWIS +PGI LL+ +V+INLV D+LRD+LNPR Q
Sbjct: 242 TEPSLGLLIANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQLRDVLNPRLQ 295


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  121 bits (304), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 6/251 (2%)

Query: 67  ITPQNPYDLMQLDVLDARLHPGTINGAGTYTYWLGTDGQGRDLVSAILYGLRISVGIGVG 126
           I P N Y    L+      +P   +       WLGTD +GRD+V+ +LYG R+SV  G+ 
Sbjct: 107 IYPLNRYHFDTLNYFATSPNPAPPSAEN----WLGTDDRGRDVVARLLYGFRVSVLFGLA 162

Query: 127 SALIAGVIGTLIGLLAAYVGGKLDTLLMRFADLVLSFPSILVAMLILAYVGKGIFNVMAT 186
                 ++G L G +  Y  GK D    RF ++  S P + + ++  +     I  ++  
Sbjct: 163 LTFTGVLLGLLTGAIQGYFAGKTDLFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLIL 222

Query: 187 LVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQV 246
           L +  W   +   R   L  R  EYV+AAR L LS+ +I+ RHILPN L P++     ++
Sbjct: 223 LSLFGWMGLSDYVRADFLRNRNLEYVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRM 282

Query: 247 ARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLIVIVAINLV 306
           + AI    +L FLGLGVP +  SLG L++ G   +    +WI+    + L ++++ +  +
Sbjct: 283 SGAILALTSLDFLGLGVPASTASLGELLAQGKNNL--DAWWIALSTFVVLTVMLLLLTNI 340

Query: 307 GDRLRDILNPR 317
           GD LR+ L+ R
Sbjct: 341 GDALRNSLDVR 351


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,970
Number of extensions: 24659
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 238
Effective length of database: 730,157
Effective search space: 173777366
Effective search space used: 173777366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)