BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1456.p
         (312 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg...    67   1e-12
gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-...    59   3e-10
gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [...    56   3e-09

>gi|134093581|ref|YP_001098656.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 315

 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 1   MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRVTPTAK 60
           M L +L+   AV        A  +   +QP +S AI +LE ELG  LF+R G  ++ T  
Sbjct: 1   MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60

Query: 61  AFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEKDRA 120
              +  + ER L    +I+E A +     V P  L     +  TIAP  L  L       
Sbjct: 61  GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRL----GIIYTIAPYLLPPLVKAMIER 116

Query: 121 FPEH-IHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELHWIGEAPCVAVVRADHPLA 179
            P+  + L+     +++  +    +   + +LP+  +GL +  + + P V  V   HP A
Sbjct: 117 VPQMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWA 176

Query: 180 GRDKLTRAALRGQRVITMSNRYRLRQRVETALGEDSRLDVAID 222
            R  +T   L+ + ++ + N +  R +V     E SR   + D
Sbjct: 177 ERSSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGD 219


>gi|134095567|ref|YP_001100642.1| transcriptional regulator
           CysB-like protein [Herminiimonas arsenicoxydans]
          Length = 313

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 20/222 (9%)

Query: 1   MDLNQLEAF-AAVMTLGSVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRV---T 56
           M+L+QL     AV    ++T A ++L  SQP VSKAI ELE ELG  +F R+G R+   T
Sbjct: 1   MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60

Query: 57  PTAKAFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACE 116
              +A L  + VE  ++ +  ++    E A  +     +  T   A    P  +Q     
Sbjct: 61  EPGRAVL--KSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFT-- 116

Query: 117 KDRAFPE-HIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLELHWIGEAPCVA----- 170
             + FP+  + L   + +Q+   VL     L + +  +A+    +  +   PC       
Sbjct: 117 --QKFPKVRLSLLQGNPKQIAEMVLMDQADLAIATEAIAN----MDGLISLPCYQWEHQI 170

Query: 171 VVRADHPLAGRDKLTRAALRGQRVITMSNRYRLRQRVETALG 212
           V+  DHPL     +T   L    +IT  + +  R +++ A  
Sbjct: 171 VLPLDHPLLKSKSITLEELAAYPIITYDSAFAGRNKIDHAFN 212


>gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 19/252 (7%)

Query: 1   MDLNQLEAFAAVMTLG-SVTGAGRSLGRSQPAVSKAIGELESELGYALFDRNGPRVTP-T 58
           M+  QL +       G ++T     L  SQP VS+ I ELE ELG  +F+RNG R+T  T
Sbjct: 1   MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60

Query: 59  AKAFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLACEKD 118
                +   ++R L+   +++  + E A +E+  + +  T   A  + P  +Q    E  
Sbjct: 61  DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAE-- 118

Query: 119 RAFPE-HIHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGL-ELHWIGEAPC-----VAV 171
             FP+  I L+ +S E +   VL     +G     +A  GL +   +   PC       V
Sbjct: 119 --FPKVRIALQQSSPEHIAEWVLSGKADIG-----IATEGLSQFEDLVSFPCYRWHHAIV 171

Query: 172 VRADHPLAGRDKLTRAALRGQRVITMSNRYRLRQRVETALGE-DSRLDVAIDTNTSFNAI 230
           V   H L     +T  AL    +IT    +  R  ++ A    D   D+ +    S    
Sbjct: 172 VPQGHALLSHAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQ 231

Query: 231 MAARAGLGVALV 242
                GLGV +V
Sbjct: 232 QYVSLGLGVGIV 243


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 562,432
Number of extensions: 22114
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 230
Effective length of database: 730,157
Effective search space: 167936110
Effective search space used: 167936110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)