BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1455.p
         (398 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransf...   465   e-132

>gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine
           sulfurtransferase [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  465 bits (1197), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/376 (58%), Positives = 281/376 (74%), Gaps = 2/376 (0%)

Query: 15  FPIYLDYGATTPVDPQVARVMCDFLTDKFGNAASSSHPFGWEARRAVEQARAQVAGLVGA 74
           FPIY+DY ATTP+DP+VA  M  +L ++FGN AS SH +GW A +AVE AR QVA LV A
Sbjct: 18  FPIYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAKLVNA 77

Query: 75  RPDEIIWTSGATESNNLALKGTAHALRAQGRGKHLITVATEHKAVLDTMHTLEKAGFEVS 134
            P EIIWTSGATE NNLALKG A   +   +GKH+ITV TEHKAVLDT+  LE+ GFE +
Sbjct: 78  DPREIIWTSGATEGNNLALKGAAQFYKT--KGKHIITVKTEHKAVLDTVRELERQGFEAT 135

Query: 135 YLQPDADGLVTPQQLRAALRPDTLLASIMYVNNEIGVIQPIAALGEVCAEQGVVFHVDAV 194
           YLQP  +GL+T +QL  A+RPDT+L S+M VNNEIGVIQPI  +GE+C  +G++FH DA 
Sbjct: 136 YLQPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAA 195

Query: 195 QAAGKIAIDLARLKVDLMSFSAHKVYGPKGIGALYVRSNPNLKLEAQIDGGGHENGMRSG 254
           QA GK+ IDL + KVDLM+F+AHK YGPKGIGALYVR  P +++EAQ+ GGGHE G+RSG
Sbjct: 196 QATGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRIRIEAQMHGGGHERGLRSG 255

Query: 255 TLATHQIVGMGAAFALAGQLLVTEGQRIRALRDRLWQGLADLPGVQLNGSAHARVPHNLN 314
           TLATHQIVGMG AF +A + +  E  RI ALRDRL +GL D+  V +NG    RVPHNLN
Sbjct: 256 TLATHQIVGMGEAFRIAREEMDEEIVRITALRDRLAKGLMDMEEVYINGDMDHRVPHNLN 315

Query: 315 VSFPPTRYGTLGSQLLGIAVSAGSACNSAAAAPSFVLLAIGRSPEVARNAVRFSLGRGTT 374
           VSF      +L   +  +AVS+GSAC SA+  PS+VL A+GRS E+A +++RF+ GR TT
Sbjct: 316 VSFNYVEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTT 375

Query: 375 EAEIDYVVATVRQVLA 390
           E ++D+ +  +++ +A
Sbjct: 376 EEDVDFTIKLIKEKVA 391


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 741,372
Number of extensions: 29864
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 314
Effective length of database: 723,567
Effective search space: 227200038
Effective search space used: 227200038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)