BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1454.p (336 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 155 2e-39 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 152 3e-38 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 144 7e-36 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 144 8e-36 gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC tr... 139 3e-34 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 155 bits (393), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 144/246 (58%), Gaps = 14/246 (5%) Query: 2 IRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGR 61 I ++ ++K + + +AL D++L+ GE+ ++G SG GK+TL+R + LE+PD G+ Sbjct: 3 IEVKNINKKFG----NFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 62 VLIDGEDITGLGHEALLGLRQR-VGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAA 120 VL+DGED + +R+R VG +FQH+ L TV +NI + L++ +R + Sbjct: 59 VLLDGEDASARH------VRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESV 112 Query: 121 ---RVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETT 177 +VT+LL+LV L+ D+YP QLSGGQ+QR+ +ARALA PR+LL DE ALD + Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 178 QAILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAV 237 + + R L ++ +L +T + +TH+ E + D++ ++ G V + G D++ P Sbjct: 173 KELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPF 232 Query: 238 TRSLLA 243 L Sbjct: 233 VYGFLG 238 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 143/245 (58%), Gaps = 8/245 (3%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I ++ + K Y + Q L D +A+G++ + G SG+GKSTLI+T+N LE G Sbjct: 1 MIEMKNVSKWYGSFQ----VLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKG 56 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDW-PLKITGRYSRQQRA 119 + +DG + G L LR R+GM+FQ+F L ++ +N+ +++ GR S ++ A Sbjct: 57 SITVDGISV-GDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGR-SEEEAA 114 Query: 120 ARVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQA 179 R + L VGL +D++P QLSGGQ+QRV IARALA P +L DE TSALDPE Sbjct: 115 ERGLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINE 174 Query: 180 ILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTR 239 +L +++ + + G+T++++THEM R + +RV ++ G++ E + F + R Sbjct: 175 VLDVMVGLAQD-GMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRAR 233 Query: 240 SLLAE 244 LA+ Sbjct: 234 DFLAK 238 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 144 bits (362), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I + + KTY G ++ L I+L I +GE I+G SG+GKSTL+ L L+RP +G Sbjct: 16 LIELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTG 75 Query: 61 RVLIDGEDITGLGHE--ALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQR 118 G D++ G + ALL R G +FQ +NL+ + + A+N++ P +G +R Sbjct: 76 SYYFMGRDVSDFGRDERALL-RRDDFGFVFQSYNLIASASAAENVEVPAMYSG-LPPAER 133 Query: 119 AARVTELLQLVGLEQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQ 178 AR LL +GL P QLSGGQ+QRV I+RAL N R++L DE T ALD ++ Q Sbjct: 134 HARAQALLTELGLADRSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQ 193 Query: 179 AILRLLLDINRKLGLTIVLITHEMEV 204 +++LL D++ + G T++LITH EV Sbjct: 194 DVMKLLADLSAR-GHTVLLITHAKEV 218 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 144 bits (362), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 144/258 (55%), Gaps = 8/258 (3%) Query: 17 DIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEA 76 D + +I+L I GE F ++G SG GK+TL+R + + PD+G++L+DG D+TG+ E Sbjct: 15 DNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPE- 73 Query: 77 LLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAARVTELLQLVGLEQHRD 136 ++ V +FQ++ L TVA NI +PL++ + + +V E L+ V L Sbjct: 74 ----QRVVRTVFQNYALFPHMTVAGNIAFPLEMANT-PKSEIKQKVDEALEDVRLTGFAA 128 Query: 137 QYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQAILRLLLDINRKLGLTIV 196 +YP +LSGGQ+QRV IARAL P+LLL DE SALD + + + L+++ +++G+T V Sbjct: 129 RYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFV 188 Query: 197 LITHEMEVIRSICDRVAVLEHGSVAEQGRVVDIFLRPQHAVTRSLLAESHAWDASDNLYQ 256 +TH+ ++ R+AV+ G++ + I+ P+ + + +D + + Q Sbjct: 189 YVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDGT--VTQ 246 Query: 257 RRADGTLVRLTYAGEVAA 274 D L+ + G V A Sbjct: 247 IAGDTMLLDVPGMGAVKA 264 >gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 280 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 1 VIRIEQLHKTYHAGQRDIIALRDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +I IE L + D+I ++NL I QGEI ++G SG+GK+ L+R + L P G Sbjct: 23 IIEIENLCTQFG----DVIVHENLNLTINQGEIVSLVGGSGSGKTVLLRQMLGLNHPTRG 78 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYSRQQRAA 120 V + GEDI + + L LR R GM+FQH L ++ TV N+ P++ +Q Sbjct: 79 TVRVFGEDINRITPQQLQQLRNRWGMLFQHGALFSSFTVFDNVAQPMRELRVLPKQLIRD 138 Query: 121 RVTELLQLVGL-EQHRDQYPAQLSGGQKQRVGIARALANTPRLLLCDEATSALDPETTQA 179 LQ+ G+ +H + P+ LSGG +RV +ARALA P LL DE T+ LDP +++ Sbjct: 139 AALLKLQMAGIGPEHALKMPSDLSGGMIKRVALARALALEPELLFLDEPTAGLDPNASES 198 Query: 180 ILRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLEHGSV---AEQGRVVDI 229 + L+ + ++ LT+V++TH+++ + ++ RVAVL + E G+VV+ Sbjct: 199 FVDLIRTLRDEMQLTVVMVTHDLDTLFALSSRVAVLADKRIIAYCEPGKVVEF 251 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 604,334 Number of extensions: 24067 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 49 Length of query: 336 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 254 Effective length of database: 730,157 Effective search space: 185459878 Effective search space used: 185459878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)