BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1450.p (516 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 410 e-115 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 387 e-109 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 379 e-106 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 350 6e-98 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 348 5e-97 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/518 (50%), Positives = 348/518 (67%), Gaps = 16/518 (3%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 + L++G RL F LL+L+ +TV+G+ R+ + + ++ + +T + A Q ++ + Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 64 MNIARA-ARNIIILEDAAQ---MASNKKSIDKDLADYQKALEYLRTHASTDESRRLTALA 119 N R AR + D Q + +I ++ Q LE L A E ++L A Sbjct: 63 TNTVRTFAR--VRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSA---EGKKLLATV 117 Query: 120 DEQSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMH--E 177 E+ Y A DV++L + G L K + +Q + + Q++ E Sbjct: 118 AEKRATYTAIRDDVMNL----REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFE 173 Query: 178 ATQAAHDT-YLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLTK 236 + DT Y ++ +L V VA+ LG++ A ++RSIT P+ A+ AR VA+GDLT Sbjct: 174 DAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTG 233 Query: 237 TITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQA 296 IT + DETG+LL AL++MN SL ++ VR+G DTIATAS +IASGN DLS+RTE QA Sbjct: 234 RITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQA 293 Query: 297 SSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASAR 356 SSLEETASSMEELTSTV+QN+ NAR A ++A A+ +A +GG +V +VV TMDGI+ SAR Sbjct: 294 SSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSAR 353 Query: 357 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKV 416 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK Sbjct: 354 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKT 413 Query: 417 LIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQ 476 LI DSV+KVD+G++LV +AG TM E+V SV +V I+ +I AA +EQ AGIEQV+QA+ Q Sbjct: 414 LIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQ 473 Query: 477 MDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 MD+VTQQNAALVE+AAAA+ ++ QAA LA+ VSIF+L Sbjct: 474 MDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 387 bits (995), Expect = e-109, Method: Compositional matrix adjust. Identities = 254/523 (48%), Positives = 346/523 (66%), Gaps = 28/523 (5%) Query: 7 LRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQK----MEYL 62 L++G RL FA +LLL+ + VIG+ R+ + Q ++ + AA++ +++ Sbjct: 6 LKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRME-------EAAEQERLSIQWH 58 Query: 63 MMNIARAARNIIIL----EDAAQMASNKKSIDK-DLADYQKALEYLRTHASTDESRRLTA 117 N A A R + ++ Q N+ + ++ Q LE L H ++E ++L + Sbjct: 59 AGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESL-IH--SEEGKKLMS 115 Query: 118 LADEQSKAYFAFTADVVDL---GLKNQNVEGQRLL---FGPRYKTQGELLTTLQQLVTLF 171 ++ Y +V L G E ++++ P +T + T+Q +V Sbjct: 116 AVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSK---TVQDVVDFQ 172 Query: 172 EGQMHEATQAAHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVAN 231 + EA + Y + L A+A+ L + A +SRSIT P+ A++ AR VA Sbjct: 173 QVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAG 232 Query: 232 GDLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSAR 291 GDL I ++ DETG+LL ALR+MN LV VS VRTG +TIATAS +IA+GN DLS+R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 292 TEHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGI 351 TE QASSLEETASSMEELTSTV+QN+ NAR A ++A +A+ +A +GG +V QVV TM+ I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 352 DASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 411 ++SA+KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 412 KEIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVH 471 KEIK LIGDSV+KVD G++LV +AG TM+E+V SV +V I+ +I AA +EQ AGIEQV+ Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 472 QAVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 QA+ QMD+VTQQNAALVE+AAAA+ ++ QA +LAE VS+F+L Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/514 (47%), Positives = 341/514 (66%), Gaps = 11/514 (2%) Query: 7 LRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLMMNI 66 +++G RL GF +LLL+ + GI R+ +++ S + + +AQ +L+ Sbjct: 6 MKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQN--WLLGTS 63 Query: 67 ARAARNIIILE--DAAQMASNKKSI---DKDLADYQKALEYLRTHASTDESRRLTALADE 121 A+R + +++ D +K+I K + + QK++E ++D+ + L A + Sbjct: 64 VNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIE---DRINSDKEKELFAEVAK 120 Query: 122 QSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQMHEATQA 181 + AY ++ + E +++ + +++ ++ +E ++ A ++ Sbjct: 121 KRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADES 180 Query: 182 AHDTYLTSSTILGVSAAVAVLLGLIAALAISRSITVPMADALDTARKVANGDLT-KTITD 240 D YL+ L + A +A+LLG + A ++ IT P+ +AL A VA GDLT ++ Sbjct: 181 ITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMA 240 Query: 241 HAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSARTEHQASSLE 300 DE G LL+AL M +LV V+ +R G DTIATAS EIASGN DLS+RTE QASSLE Sbjct: 241 ETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGIDASARKIVD 360 ETASSMEELTSTV+QN+ N+R A ++A AA+ +A +GG +V QVV TM I+ SA+KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK LIGD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGD 420 Query: 421 SVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEV 480 SVEKVD+G++LV +AG TM EIV V +V I+ +I+AA +EQ GIEQV+QAV+QMD+V Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQV 480 Query: 481 TQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 TQQNAALVE+AAAA+ ++Q QA LAE VS+FR+ Sbjct: 481 TQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 350 bits (899), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 243/524 (46%), Positives = 327/524 (62%), Gaps = 24/524 (4%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 L+ + + RL + ++LIV +GI + + + T I + P A M + Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 64 MNIARAARNIIILEDAAQMASN--KKSIDKDLADYQKALEYLRTHASTDESRRLTALADE 121 + ARA N++ + + + K++ + L ++ +YL T E R++ ADE Sbjct: 62 LQ-ARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKV---ADE 117 Query: 122 QSKAYFAFTADVVDLGL-------KNQNVEGQRLLFGPRYKTQGELLTTLQQLVTLFEGQ 174 + + + + GL +N+ VE +L L + +LV L Q Sbjct: 118 VTAKRIRYLKEA-EQGLIAALRAGRNEEVED--ILVNKMPPLFQSLTKSTDELVEL---Q 171 Query: 175 MHEATQAAHDTYLTSSTILGVSAAVAVLLGLIA----ALAISRSITVPMADALDTARKVA 230 M A D+ T + A V VLLGLI A + R+IT P+ + L +A Sbjct: 172 MKSAATGYQDSQ-TLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIA 230 Query: 231 NGDLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSA 290 +GDLT I + +E G L+ L++M + L D V+ VR G+ I+TA+ EIA+GN DLS+ Sbjct: 231 SGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSS 290 Query: 291 RTEHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDG 350 RTE QA+SLEETASSMEELTSTV+QN+ NAR A ++A +A+ +A +GG +V VV TMD Sbjct: 291 RTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDA 350 Query: 351 IDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 410 I+ SARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAA Sbjct: 351 INTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 410 Query: 411 AKEIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQV 470 AKEIK LI DSV KVD+G +LV +AG TM E+V SV +V I+ +I AA +EQ AGIEQV Sbjct: 411 AKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQV 470 Query: 471 HQAVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 + A+ QMDEVTQQNAALVEQAAAA+ +++ QA L+ VS+F+L Sbjct: 471 NTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL 514 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 348 bits (892), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 239/522 (45%), Positives = 335/522 (64%), Gaps = 16/522 (3%) Query: 4 LRRLRLGARLAAGFAALLLLLIVITVIGITRMSSLDQTSIEISGSTYPKVNAAQKMEYLM 63 + + +G +L + F L + ++ IGI M ++ + +I ++ + + Sbjct: 2 FKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAGDIYNQELMGLSYIKDANIDL 61 Query: 64 MNIARAARNIIILEDAAQMASNKKSIDKDLADYQKALEYLRTHASTDESRRLTA----LA 119 + I RA N+++ + NK++I K LA ++ L + +D ++ L A ++ Sbjct: 62 LFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVSDSAKALFAKYATVS 121 Query: 120 DEQSKAYFAFTADVVDLGLKNQNVEGQRLLFGPRY--KTQGELLTTLQQLVTLFEGQMHE 177 + K + A L+ ++ E + R T +LT L + + Q H Sbjct: 122 QDYEKEMWRALALADKEPLQQRSAELTTSMAQTRLHANTLDNVLTELSKQKEVRAAQAHV 181 Query: 178 ATQAAHDTYLTSSTILGV-SAAVAVLLGLIAALAISRSITVPMADALD----TARKVANG 232 T+ +D+ +L + SA +LLG++ I+R++ + + A ++A G Sbjct: 182 ETEQLYDSSRAFMVLLVILSAFSGILLGVL----ITRNLKGQLGGEPNYAAGVAARIAAG 237 Query: 233 DLTKTITDHAPDETGELLAALREMNRSLVDIVSSVRTGADTIATASQEIASGNQDLSART 292 DLT I + D+T +L A+REM SL IVS VR+G DTI TAS +IA+GN DLS+RT Sbjct: 238 DLTVAIDLRSKDQTS-MLFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRT 296 Query: 293 EHQASSLEETASSMEELTSTVQQNSANARHAAEMAQAATQIAGQGGEIVGQVVTTMDGID 352 E QAS+LEETASSMEE+TSTV+QN+ N++ A+ +A A+ A +GG +V QVV TM I Sbjct: 297 EEQASALEETASSMEEITSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSIT 356 Query: 353 ASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAK 412 S+RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAK Sbjct: 357 ESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 416 Query: 413 EIKVLIGDSVEKVDSGAQLVKKAGHTMQEIVQSVAQVNTIIGQISAAGEEQRAGIEQVHQ 472 EIK LIGDSVEKVD+G++LV++AG TM+EIV + +V I+ I+AAG EQ AGIEQV+Q Sbjct: 417 EIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQ 476 Query: 473 AVAQMDEVTQQNAALVEQAAAASRAMQGQAAELAEQVSIFRL 514 A+AQMDEVTQQNAALVE+AAAAS+++Q QA L+E VS+F+L Sbjct: 477 AIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSVFKL 518 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.125 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 549,717 Number of extensions: 15374 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 14 Length of query: 516 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 430 Effective length of database: 716,977 Effective search space: 308300110 Effective search space used: 308300110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)