BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1444.p (215 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 169 8e-44 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 141 2e-35 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 139 2e-34 gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [... 135 1e-33 gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [... 134 3e-33 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 169 bits (429), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 89/176 (50%), Positives = 118/176 (67%), Gaps = 4/176 (2%) Query: 34 RLDQQ---LADAKSV-NASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLF 89 RL+ Q LA + +V N L +QAL D+LT LPNR LLEDR+++ + +AER RFAL+F Sbjct: 244 RLESQTSLLAKSLAVANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMF 303 Query: 90 LDLDGFKAVNDRLGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACGDIT 149 +DLDGFKA+ND LGH GD+LL+++ +R+ S+R DT AR+GGDEFV+L E+ D Sbjct: 304 IDLDGFKAINDSLGHHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIEVTEPEDAA 363 Query: 150 IIRDKLTQALTQPFPIGPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRT 205 + DKL + QPF I +L VSAS+G YP+DG + LL AD MYH K T Sbjct: 364 SVADKLCNIINQPFEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKST 419 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 141 bits (356), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 125/215 (58%), Gaps = 14/215 (6%) Query: 10 ALLGAVAVIGVLGGLLRKA---RRRCDRLDQQLADAKSVNASLRQ-------QALYDSLT 59 A+ ++AV+ +L GLL A RR + L + ++ + L Q QA +D LT Sbjct: 115 AIAVSIAVVFLLCGLLMIASRQRRLYNVLTASEQEKLNLISQLEQEKSRALLQASHDYLT 174 Query: 60 GLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAVNDRLGHAAGDLLLMQIGERLS 119 G+PNR L + + +ARA+R + +AL FLDLD FK +ND LGHA GDLLL + RL Sbjct: 175 GVPNRRLFYEMAATELARAKRSRKLYALFFLDLDKFKLINDTLGHAVGDLLLQGVARRLR 234 Query: 120 ESLRHADTIARIGGDEFVVL-SEIVACGDITIIRDKLTQALTQPF-PIGPTSLNVSASLG 177 ESLR D +AR+GGDEFV+L SE+ + DI + KL + PF +G ++VS S+G Sbjct: 235 ESLREYDLLARLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGNDIDVSPSIG 294 Query: 178 HAHYPEDGLSMEALLARADQGMYHLKRTRQQASTY 212 A YP DG +E LL AD MY K A+TY Sbjct: 295 IALYPRDGQDVETLLMHADLAMYSAKSA--GAATY 327 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 106/175 (60%) Query: 35 LDQQLADAKSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDG 94 +++ + + K+ A + A +D LTGLPNR LL++R A+ AE +Q A++FLDLD Sbjct: 414 IEEDITNQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDH 473 Query: 95 FKAVNDRLGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACGDITIIRDK 154 FK +ND LGH GD LL+++ +RL LR DT++R+GGDEFV+L I + Sbjct: 474 FKNINDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQE 533 Query: 155 LTQALTQPFPIGPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRTRQQA 209 L +A+ +P+ IG LNV AS+G A YP DG+ E L AD MY K+ + A Sbjct: 534 LMRAINEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNA 588 >gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans] Length = 540 Score = 135 bits (341), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 97/158 (61%), Gaps = 1/158 (0%) Query: 49 LRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAVNDRLGHAAGD 108 LR A +D LT LPNR LL DR+S +A+A R F+++ LDLDGFK VND LGHA GD Sbjct: 105 LRHMATHDELTNLPNRALLADRLSMGMAQARRTNIGFSVIALDLDGFKKVNDALGHAVGD 164 Query: 109 LLLMQIGERLSESLRHADTIARIGGDEFV-VLSEIVACGDITIIRDKLTQALTQPFPIGP 167 LL RL E+LR DT+AR+GGDEFV VL + +I + ++ AL PF I Sbjct: 165 ALLRIAAGRLRETLRDVDTLARVGGDEFVAVLPGAIDEAEIQNVARRMISALQLPFEIND 224 Query: 168 TSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRT 205 +L VSAS+G A YP G S LLA AD MY K T Sbjct: 225 DTLYVSASIGVAIYPIHGDSEVKLLAHADAAMYRAKET 262 >gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans] Length = 526 Score = 134 bits (337), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 103/174 (59%) Query: 30 RRCDRLDQQLADAKSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLF 89 R D + L A + + QA +D LTGL NR L ++ +++ +A ER Q ++L+ Sbjct: 337 READEVGGSLIRASEMLQKAQHQANHDVLTGLANRGLFDEIVNQQLALCERNQTSLSVLY 396 Query: 90 LDLDGFKAVNDRLGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACGDIT 149 +DLDGFKAVND GH GD LL ++ RL S RH+D +AR+GGDEF ++ D Sbjct: 397 IDLDGFKAVNDAYGHETGDQLLCEVAARLKASSRHSDLVARLGGDEFAIVMVGTGLKDAA 456 Query: 150 IIRDKLTQALTQPFPIGPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLK 203 +KL ++L+ + G S ++SAS+G A YP+ L+ +ALL AD+ MY K Sbjct: 457 FFAEKLVESLSAVYVFGNLSAHISASIGVASYPDCALTSDALLQYADRAMYQAK 510 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 331,829 Number of extensions: 12306 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 30 Length of query: 215 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 137 Effective length of database: 743,337 Effective search space: 101837169 Effective search space used: 101837169 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)