BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1438.p (580 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 354 8e-99 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 334 8e-93 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 331 6e-92 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 324 6e-90 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 324 8e-90 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 354 bits (908), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 253/580 (43%), Positives = 363/580 (62%), Gaps = 53/580 (9%) Query: 1 MFSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMG--------- 51 MF ++TVG KL +FL L V I + + ++N ++ + +G +++ E+MG Sbjct: 1 MFKNMTVGTKLISSFLTLSVAGAIVAGIGIYNMGKINDKAG-DIYNQELMGLSYIKDANI 59 Query: 52 -------AADDMLLNMVNVE-----TGIRGYVASGNE--AFLDPYKIGRKNFRTAFEKAK 97 A ++LL+ E I+ Y+AS E A P + + + F K Sbjct: 60 DLLFIGRARGNVLLSTTEEERTLNKENIKKYLASAKENLAKAQPLFVS-DSAKALFAKYA 118 Query: 98 SLTADNPAQQKR---LAEMLDLTDKIEEVDQMLMKLRKEANASASTQELQSYFGATHDKI 154 +++ D + R LA+ L + E+ + + R AN T D + Sbjct: 119 TVSQDYEKEMWRALALADKEPLQQRSAELTTSMAQTRLHAN--------------TLDNV 164 Query: 155 YMDRFRAVQQEFVQAEESLLSVRSELVHTLSQSTLWTLIGAGAVT-ILLAIGAGFTITRS 213 + + Q+ V+A ++ V +E ++ S++ + L+ A + ILL G ITR+ Sbjct: 165 LTELSK---QKEVRAAQA--HVETEQLYDSSRAFMVLLVILSAFSGILL----GVLITRN 215 Query: 214 ILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTSLMASLVSMKDQLTNIVRGIQASG 273 + LGGEP AA VA IAAGDLTVA+ L+ D+TS++ ++ M+D L +IV +++ Sbjct: 216 LKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIVSQVRSGT 275 Query: 274 ESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAENAS 333 ++IT A+G+IA GN DLS RTEEQA++LEETASSME++TSTV+QN++N++QA+ LA +AS Sbjct: 276 DTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQASTLAVHAS 335 Query: 334 GLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGR 393 A++GG VVS+V+DTM I++SS K+ DII VI+GIAFQTNILALNAAVEAARAGEQGR Sbjct: 336 STAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 395 Query: 394 GFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTD 453 GFAVVASEVRSLAQRSA AAK++K LI S E+V G++LV +AG T+ E+V ++ V D Sbjct: 396 GFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVGGIQRVAD 455 Query: 454 IMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGV 513 IM++I+AA EQ+AGIEQVNQA+ QMD+VTQQNAALVE+AAAA+Q++ +QA L V V Sbjct: 456 IMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATHLSEIVSV 515 Query: 514 FKVAGTS-QARVAPARVAPRPAPAPVAAAVTKPVLREAAP 552 FK+ T QA A A R +A V + + +AA Sbjct: 516 FKLDNTQIQAAHAGKPAAARSQAKSLANTVRRTMANKAAS 555 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 334 bits (856), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 205/398 (51%), Positives = 270/398 (67%), Gaps = 19/398 (4%) Query: 141 QELQSYFGATHDKIYMDRFRAVQQE-----FVQAEESLLSVRSELVHTLSQSTLWTLIGA 195 Q+ Q A + I D R +Q + + A++ L++R+ + T++GA Sbjct: 147 QQFQKLVPAVRNSI--DALRKLQVDEAGLAYEAAQQRYLTIRN---------VIATVLGA 195 Query: 196 GAVTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTSLMASL 255 GAV L GF + RS+ LGGEP AA + + IA GDL+ + + DR SL+A++ Sbjct: 196 GAVAATLL---GFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAM 252 Query: 256 VSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTV 315 M+ L V I+ + ++I A+G+IA GN DLS RTE+QA+SLEETASSME+LT+TV Sbjct: 253 QDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATV 312 Query: 316 RQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTN 375 +QN+ +A+QAN LA +AS +AV+G VV++V+ TM+ IS S+ ++ DII VI GIAFQTN Sbjct: 313 KQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTN 372 Query: 376 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVG 435 ILALNAAVEAAR GEQGRGFAVVA+EVRSLAQRSA AAK++K LI S E+VG G LV Sbjct: 373 ILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVD 432 Query: 436 EAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAA 495 +AG T+ E+V ++ VTDIM EI+ AS EQTAGIEQVNQA+ QMD+VTQQNAALVE+AAA Sbjct: 433 QAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAA 492 Query: 496 AAQAMSEQAVELRAAVGVFKVAGTSQARVAPARVAPRP 533 AA ++ EQA L V VFK+ R A + P Sbjct: 493 AAGSLQEQACSLVQVVSVFKLEQAQSHRTALPHMLDMP 530 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 331 bits (849), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 215/391 (54%), Positives = 271/391 (69%), Gaps = 13/391 (3%) Query: 193 IGAGAVTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTS-L 251 IGA +LLA F + R I L A +A+S+AAGDLT + + + T L Sbjct: 192 IGAIIFGVLLAGFMAFWLIRLIARPLH----DAVQIARSVAAGDLTQQIHVNSTNETGQL 247 Query: 252 MASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQL 311 + +L M D L+ V ++ E+ITVA+GEIA+GN DLS RTE QA SLEETASSME+L Sbjct: 248 LQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEEL 307 Query: 312 TSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIA 371 TSTVRQN+DNA+QAN L +A+ +AVKGG VVS V+ TM I DSS K+ DII VI+ IA Sbjct: 308 TSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIA 367 Query: 372 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGT 431 FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAGAAK++K LI S +V G+ Sbjct: 368 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGS 427 Query: 432 QLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVE 491 +LV +AG T+ E+V +V++V DIM+EI++AS EQ+ GIEQVNQA+ QMD++TQQNAALVE Sbjct: 428 KLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVE 487 Query: 492 QAAAAAQAMSEQAVELRAAVGVFKV--AGTSQARVAPARVAPRPAPAPVAAAVTKPVLRE 549 QAAAAAQ+M +QAVEL AV +FK+ G++ + A R R APA AA P Sbjct: 488 QAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTR---RAAPALQAA---NPATTS 541 Query: 550 AAPLPSPKKSEAVRTAASSSHKKADEEWETF 580 A +P K + S K+ ++WE F Sbjct: 542 RALTAAPHKQLETKPQKPISADKSGDDWEEF 572 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 324 bits (831), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 257/596 (43%), Positives = 356/596 (59%), Gaps = 50/596 (8%) Query: 2 FSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMGAADDMLLNMV 61 ++L +G +LGLAF VV L+ +S+ + RL+E + V E AA+ L+ Sbjct: 3 ITNLKIGVRLGLAF---AVVLLLMASMMVIGVWRLQEVAQATVRMEE---AAEQERLS-- 54 Query: 62 NVETGIRGYVASGNEAFLDPYKIGRKNFRTAFEKAKSLTADN---PAQQKRLAEMLD--- 115 I+ + + A +I N + +TA + Q +L ++ Sbjct: 55 -----IQWHAGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEE 109 Query: 116 ---LTDKIEEVDQMLMKLRKE-----ANASASTQELQSYFGATHDKIYMDRFRAVQQEFV 167 L + + + M +RKE A+ S + +E A+ ++ + Q+ V Sbjct: 110 GKKLMSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVV 169 Query: 168 QAEE-SLLSVRSELVHTLSQSTLWTLIGAGAVTILLAIGAGFTITRSILHALGGEPAQAA 226 ++ + L ++E V L S L+ GA+ + L+ + ++RSI L A Sbjct: 170 DFQQVTFLEAKTE-VDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPL----EYAV 224 Query: 227 SVAQSIAAGDLTVAVALKPNDRT-SLMASLVSMKDQLTNIVRGIQASGESITVAAGEIAT 285 VA+++A GDL + + +D T L+ +L M D L V ++ E+I A+ +IA Sbjct: 225 EVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAA 284 Query: 286 GNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAENASGLAVKGGEVVSR 345 GN DLS RTEEQA+SLEETASSME+LTSTV+QN+DNA+QAN LA +ASG+A KGG VVS+ Sbjct: 285 GNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQ 344 Query: 346 VIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 405 V+DTM +I+ S+ K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+L Sbjct: 345 VVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 404 Query: 406 AQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQ 465 AQRSA AAK++K LI S ++V G++LV EAG T+ EVV +V+ VTDIM+EI AAS EQ Sbjct: 405 AQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQ 464 Query: 466 TAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKVAGTSQARVA 525 +AGIEQVNQA+ QMDQVTQQNAALVE+AAAAA++++EQA +L AV VFK+ G + + A Sbjct: 465 SAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPA 524 Query: 526 PARVAPRPAPAPVAAAVTKPVLREAAPLP-SPKKSEAVRTAASSSHKKADEEWETF 580 V A A A + + AAP P SPK AA+ +EWE F Sbjct: 525 TKTVRKIAAAASHHAPAKRAI---AAPTPVSPK-------AATGG-----DEWEEF 565 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 324 bits (830), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 199/351 (56%), Positives = 247/351 (70%), Gaps = 25/351 (7%) Query: 231 SIAAGDLTVAVALKP-NDRTSLMASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTD 289 +IA+GDLT + +K N+ +LM L M+ +LT+ V ++ +I+ A EIA GN D Sbjct: 228 TIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLD 287 Query: 290 LSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDT 349 LS RTE+QAASLEETASSME+LTSTV+QN+DNA+QAN LA +AS +AVKGG VVS V++T Sbjct: 288 LSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNT 347 Query: 350 MNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 409 M+ I+ S+ K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 348 MDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 Query: 410 AGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGI 469 A AAK++K LI S +V GT+LV EAG T+ EVV +V+ VTDIM+EI AAS EQ+AGI Sbjct: 408 AAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGI 467 Query: 470 EQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKVAGTSQARVAPARV 529 EQVN A+VQMD+VTQQNAALVEQAAAAA ++ +QA L V VFK+ G AP + Sbjct: 468 EQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQS---APQNL 524 Query: 530 APRPAPAPVAAAVTKPVLREAAPLPSPKKSEAVRTAASSSHKKADEEWETF 580 P+ PK E+ A + + K D +WE F Sbjct: 525 VPQ---------------------ARPKALESRPAAIAHTGKGNDGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 735,285 Number of extensions: 23418 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 16 Length of query: 580 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 493 Effective length of database: 713,682 Effective search space: 351845226 Effective search space used: 351845226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)