BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1429.p
         (214 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg...    91   6e-20
gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon...    79   2e-16
gi|134093850|ref|YP_001098925.1| putative two-component system r...    59   2e-10

>gi|134095064|ref|YP_001100139.1| LuxR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 215

 Score = 90.5 bits (223), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 3   IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62
           I+V IADD+ +V  G++ ILA   DI +A  AE+ ++ +    +   +VLL D +    P
Sbjct: 7   IKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISM---P 63

Query: 63  QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122
              GI++LK++R+  P + ++ LS H +      +L+ GA G++ K +S    L  AI  
Sbjct: 64  DRSGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNK-QSAPAELVTAIRQ 122

Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQ-LSERELTVARMICQGMSIGTIAERLKR 181
           V  G+ Y+   L+  L   +   H  ++ L + LS+RE     MI  G ++  IA  L  
Sbjct: 123 VAAGRKYISAELAQELANQINDNH--ETPLHETLSDREYQTLTMIASGKTVSDIAAELVL 180

Query: 182 SPKTISNQKVAAMKKLGVSNDVELS 206
           S KTIS  +   ++K+ + ++ EL+
Sbjct: 181 SVKTISMYRSRLLQKMKLRHNAELT 205


>gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score = 79.0 bits (193), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 5/201 (2%)

Query: 2   MIRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDD 61
           MI++ + DD+ VV  G++  +A  PD+ +   A +  + +  +     D++L D      
Sbjct: 1   MIKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINM--- 57

Query: 62  PQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIY 121
           P   G+++LK+++R  P + V+ LS H +       L  GA G++ K  +    L  AI 
Sbjct: 58  PDKSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKE-ALAEELVTAIQ 116

Query: 122 CVQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKR 181
            +  G  Y+  +++  L   +   +  +     LS+RE  +   +CQG  +  IA+ L  
Sbjct: 117 TILRGHKYISHTVAELLTAEV-DPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCL 175

Query: 182 SPKTISNQKVAAMKKLGVSND 202
           S KT+S  +   ++K+ + N+
Sbjct: 176 SVKTVSTYRARVLQKMNMENN 196


>gi|134093850|ref|YP_001098925.1| putative two-component system
           response regulator [Herminiimonas arsenicoxydans]
          Length = 232

 Score = 58.5 bits (140), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 18/206 (8%)

Query: 5   VAIADDYPVVLRGIEAILAPCPDITLAFSAE------SITQLMACLEQAAVDVLLCDYAF 58
           V + +D P++ R +E +L     + L +S++      S+ +  AC+    + + L D   
Sbjct: 21  VLLVEDEPLIRRRLEGLL-----LQLGYSSDALVMTGSLAEARACMVNQPIALALVDLGL 75

Query: 59  DDDPQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQ 118
              P   GIDL+  +    PA+ ++ +SA +    I +AL  GA G++ K R D   +  
Sbjct: 76  ---PDGSGIDLIAEMHMADPALPILVISAWSTEDAILAALRAGATGYVLKERDDM-EVAL 131

Query: 119 AIYCVQNGQVYLPQSLSSALLGNL---YRVHTRQSGLGQLSERELTVARMICQGMSIGTI 175
           +I  V  G   +   ++  ++  L      H +      LS RE  +  ++ QG++   I
Sbjct: 132 SIRSVLRGGAPIDPFIARRIIDELRPKTMPHEKAPNNETLSPRESEILGLVAQGLANREI 191

Query: 176 AERLKRSPKTISNQKVAAMKKLGVSN 201
           +E+L  S  TI        +KL VS+
Sbjct: 192 SEQLHLSRYTIECHIKHIYRKLAVSS 217


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 369,322
Number of extensions: 13757
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 136
Effective length of database: 743,337
Effective search space: 101093832
Effective search space used: 101093832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)