BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1428.p (1085 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094133|ref|YP_001099208.1| putative response regulator rec... 171 2e-43 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 149 7e-37 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 100 4e-22 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 82 2e-16 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 81 2e-16 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 148/237 (62%) Query: 506 AKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREHLSPSQHQRVELIRHAFDML 565 AK+ A+ AN+AKS FLA +SHEIRTP++G +G M+L + Q + +E +++ + L Sbjct: 178 AKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAQASDVEQREYLETAQYSAEAL 237 Query: 566 MSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAPLALDKGLQFHCLPCAALEQP 625 ++++NDILD +K+E+ + A + ++ +L + L + A L + Sbjct: 238 LTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDADLPRL 297 Query: 626 VRGDPRRLLQILQNLVGNAVKFTASGGITLSAQLLQSSQDKSIVRFEVADTGIGISPSAR 685 + GD RL Q+L NL+GNA+KFT G +TL + L +S + +RF V D+GIGI+ + Sbjct: 298 LTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPASGTQIPLRFTVIDSGIGITAEEQ 357 Query: 686 QRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEVGKGSTFGAEISL 742 R+F+S QAD SIS+RFGGTGLGLS+C+++ E+ G I ++S G+GS F E++ Sbjct: 358 TRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFELTF 414 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 160/310 (51%), Gaps = 13/310 (4%) Query: 503 MREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHME-LLAREHLSPSQHQRVELIRHA 561 ++ AK A+ ANQAK+ ++A +SHE+R+PL+ +G+ + LL EHL+ + ++ I + Sbjct: 112 LQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQILLKNEHLAAAPRTAIQTIHRS 171 Query: 562 FDMLMSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAPLALDKGLQFHCLPCAA 621 + L+ LV+++LD+ +IE + L + ++ LE+ + P A KGL+ C Sbjct: 172 GEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLLSMVRPQAEAKGLKLLCTYNGK 231 Query: 622 LEQPVRGDPRRLLQILQNLVGNAVKFTASGGITLSAQLLQSSQDKSIVRFEVADTGIGIS 681 + + V D +RL QI NL+ NAV+FT G +TL + +S VRF+V DTGIGI+ Sbjct: 232 ISRYVLADGKRLRQIFINLLTNAVRFTDDGSVTLHVECSPAS-----VRFDVVDTGIGIA 286 Query: 682 PSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEVGKGSTFGAEIS 741 RQRIF+ ++ + G GLGL++ +L LM G + L S G+GSTF + Sbjct: 287 VQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILLMNGSLNLVSMQGQGSTFIVRLP 346 Query: 742 LARIQQAEQACVPPLQG-----RKVVVHVQDPATAAMLRAYLQHWGAEFVAPASATPA-- 794 L I E + G R ++V P ML L G AS Sbjct: 347 LTEITAFESLPQRDVIGHAGPARTLLVVDDQPVQRHMLTGMLIPLGFNVREAASGNECLD 406 Query: 795 MLHLVAPDGI 804 +L APD I Sbjct: 407 LLQDFAPDAI 416 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 17/254 (6%) Query: 493 LNMQKAHEALM------REAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREH 546 L +++A+E L+ ++ ++ A+ AN + FL+ ++HE+R+PL +LL + Sbjct: 76 LQLREANENLVLAAFGAQDMQAKAESANHRQEEFLSMLAHELRSPLAPIAMAADLLGKIT 135 Query: 547 LS-PSQHQRVELIRHAFDMLMSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAP 605 + P + +I + LV+D+LD +++ T +ITL L ++++++ + P Sbjct: 136 TAHPMLPKLYGIISRQVGHMAHLVDDLLDASRVSTGNITLQKRSLLLSEIIDSAVETSQP 195 Query: 606 LALDKGLQFH-CLPCAALEQPVRGDPRRLLQILQNLVGNAVKFT-ASGGITLSAQLLQSS 663 + Q LP + + GD RL Q NL+ NA KFT G I +SAQ+L Sbjct: 196 FINQRNQQLTITLPEDTV--VINGDLVRLAQAFANLIINATKFTPVDGHIDISAQVL--- 250 Query: 664 QDKSIVRFEVADTGIGISPSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGD 723 +V+ + D G+GI+P + IF +Q S+ + GG G+GLSL R + ++ GG Sbjct: 251 --ADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVVQMHGGT 308 Query: 724 ITLDSE-VGKGSTF 736 +++ S +G GS F Sbjct: 309 VSVYSAGLGCGSEF 322 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 14/220 (6%) Query: 520 FLAQVSHEIRTPLHGAIGHMELLAREHLSPSQHQRVELIRHAFDMLMSLVNDILDITKIE 579 F+A +H++RTP+ G H+EL RE+ + + + + + L LV+ +L + + E Sbjct: 229 FIADTAHQLRTPVAGLKAHIELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNE 288 Query: 580 TQSITLAAEELRVNDLLEECAQLFAPLALDKGLQFHCLPCAALEQPV--RGDPRRLLQIL 637 ++ + +N L AQ + PLA K + L QPV G+ R+ +++ Sbjct: 289 PNNVAVNFAPFDLNQLALRAAQEWVPLAYKKQID---LGFDTAGQPVLLNGEAARVTEMI 345 Query: 638 QNLVGNAVKFTASGGITLSAQLLQSSQDKSIVRFEVADTGIGISPSARQRIFKSLQQADD 697 NLV NA+++T GG ++ + Q I V+D G I R RIF+ + Sbjct: 346 NNLVDNAIRYTPPGG-RVTVHVRQDEHAHLI----VSDDGARIPVEERTRIFERFHRLLG 400 Query: 698 SISQRFGGTGLGLSLCRRLAELMGGDITLDSEV-GKGSTF 736 S + G+GLGL++ +A L ITL+ +V G G+TF Sbjct: 401 SHEE---GSGLGLAIVHEIATLHNATITLEDDVDGVGNTF 437 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 14/251 (5%) Query: 495 MQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREHLSPSQHQR 554 + + L+ + ++R + F+A SHE+RTPL G +E+ A+ Q R Sbjct: 184 FENRRQILVTHDATESERIEMMRRDFIANASHELRTPLTVINGFLEI-AQAQPDLDQAIR 242 Query: 555 VELIRHAFDM---LMSLVNDILDITKIETQSITLAAEELRVNDLLEECAQLFAPLALDKG 611 + ++ + + +LV D+L +T++E+ L E + +++LLE+ Q L+ + Sbjct: 243 MSHLKLMIEQGQRMQNLVEDMLTLTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGGR- 301 Query: 612 LQFHCLPCAALEQPVRGDPRRLLQILQNLVGNAVKFTA-SGGITLSAQLLQSSQDKSIVR 670 H + + G L NLV NAV++T G I + Q + + Sbjct: 302 ---HEISLTIDGPDIEGSADELRSAFSNLVSNAVRYTPIHGRIDIKWQNTAAGP-----Q 353 Query: 671 FEVADTGIGISPSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEV 730 F V DTGIG+ P R+ + + D S S+ GTGLGL++ + + G + ++S+ Sbjct: 354 FSVKDTGIGMRPEHLVRLTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLAIESQP 413 Query: 731 GKGSTFGAEIS 741 GSTF + Sbjct: 414 DVGSTFSVQFK 424 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,859,087 Number of extensions: 72540 Number of successful extensions: 338 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 18 Length of query: 1085 Length of database: 1,000,347 Length adjustment: 92 Effective length of query: 993 Effective length of database: 697,207 Effective search space: 692326551 Effective search space used: 692326551 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)