BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1383.p
         (384 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095495|ref|YP_001100570.1| putative integrase [Herminiimon...   182   3e-47

>gi|134095495|ref|YP_001100570.1| putative integrase [Herminiimonas
           arsenicoxydans]
          Length = 387

 Score =  182 bits (461), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 199/388 (51%), Gaps = 38/388 (9%)

Query: 1   MGRNGTGVVAASETSIEITFTYRGKRCRERI-----KLAPTPANMKRAAQHRAAILDAIQ 55
           MG   +GV    ETSI I FT++GK+ +E I      L PTPAN+K A +  A + D ++
Sbjct: 1   MGPRTSGV-EVRETSIRIIFTFQGKQRKETICLDNEPLHPTPANIKYATRIAAEVRDKVR 59

Query: 56  KQTFEYRVTFPDSPRAAYFAERKGEILTVEKYLDSWLDAQRSHLKASTYDGYRKVVNNHL 115
              F Y   FP S  A     +   + TV +++D W    +  LK ST   Y+++  N  
Sbjct: 60  TGLFAYADYFPQSRHA-----KPDHVGTVGEFMDKWY--AQLELKPSTLSEYKRMKENFW 112

Query: 116 IPAFGTTKLSDLNRKAIKDWCSSQQ-TSLKAIKNRLSVLRSALNSAAQDELIDTNP---L 171
            PA G  ++  +    I     S   +S +   N L +LR+  N A  D +I  NP   +
Sbjct: 113 KPALGRKRVDKITHSDITTALKSGTWSSNRTRNNMLYMLRAVFNLAVADGVIHKNPCATI 172

Query: 172 YGWQWKSRAVVKTEDDVDPFSANEQQQILSCME----GQDRNMFKFAFWTGLRTSELIAI 227
              QW+ +         DPFS  E  +I++ +      Q  N ++F F++GLRT E + +
Sbjct: 173 ENAQWQRK-------KPDPFSIVEANRIIASLHEKQHQQVANFYEFMFFSGLRTGEGLGL 225

Query: 228 EWSDVDWHRKTVQVRRALTRAAIANKSDAEPPKTRAGKRDVKLLAPALEALESQKAHTL- 286
           +W++VD H++ V +R++  R       + +  KT + +R VKL   AL+AL+ QKA TL 
Sbjct: 226 DWANVDLHKRIVVIRQSFVRG------EMQETKT-SSERTVKLTNRALDALKRQKAWTLL 278

Query: 287 GKTDFIFTNPRTGKRWSGDL-VVRSAWKRAIHAAKVRYRRPYQTRHTYASMMLTAGESPM 345
            K+  +F NP T + W+ +  +    WK A+    +RYRRPY TR TYA++ L +G  P 
Sbjct: 279 DKSGRVFHNPSTNRPWAKEQNISEPYWKPALKLLGIRYRRPYNTRATYATIGLMSGARPA 338

Query: 346 WVAQQMGHSDWTMIARVYGRWIKDAQPD 373
           ++A Q+GHS   +  R Y  WI D   D
Sbjct: 339 YMAAQLGHS-LEVFYRDYADWIADQDDD 365


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 717,021
Number of extensions: 26738
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 301
Effective length of database: 726,862
Effective search space: 218785462
Effective search space used: 218785462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)