BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1380.p (513 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094155|ref|YP_001099230.1| fumarase A [Herminiimonas arsen... 946 0.0 gi|134096482|ref|YP_001101557.1| putative L-tartrate or fumarate... 109 3e-25 gi|134096483|ref|YP_001101558.1| putative L(+)-tartrate or fumar... 58 1e-09 >gi|134094155|ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] Length = 512 Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/510 (87%), Positives = 482/510 (94%), Gaps = 1/510 (0%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIAHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 MTIIKQDDLIESVAAALQYISYYHP DYI HLARAYE EQSPAAKDAIAQILTNSRMCAE Sbjct: 1 MTIIKQDDLIESVAAALQYISYYHPQDYIQHLARAYEAEQSPAAKDAIAQILTNSRMCAE 60 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 GKRPICQDTGIVNVFLKIGM V+ EGF+GSIADAVNEGVR+ Y+HPDN LRASIVADP F Sbjct: 61 GKRPICQDTGIVNVFLKIGMSVKLEGFTGSIADAVNEGVRQAYNHPDNKLRASIVADPHF 120 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAV+HMELVPGNT+DVQ+AAKGGGSENK+KFVMLNPSD+LVDWV++TVP M Sbjct: 121 ERKNTKDNTPAVVHMELVPGNTIDVQVAAKGGGSENKSKFVMLNPSDSLVDWVMQTVPQM 180 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGGTAE+AMLMAK+VLMEDIDMYEL KRGPQNKTEELRIEL +K+NA Sbjct: 181 GAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINA 240 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRH HFVLDGSGP Y++PPSL Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPSL 300 Query: 301 SDWPQVQWVADTEKSKRVDLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 SDWP V W +TE SKRVDL+TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK Sbjct: 301 SDWPDVNWAPNTELSKRVDLNTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNR+IYYVGPVDPVRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ER Sbjct: 361 GEKLPVDFTNRIIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAER 420 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFEVKDMPVTVAV 480 GP AIE+IKKH+SAYLMAVGG+AYLVSKAIK+AKV+GFADLGMEAIYEF+V DMPVTVAV Sbjct: 421 GPTAIESIKKHQSAYLMAVGGAAYLVSKAIKTAKVVGFADLGMEAIYEFDVTDMPVTVAV 480 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPV 510 D+ G SVHN GP EWK+KI + + L++IPV Sbjct: 481 DSTGTSVHNIGPKEWKDKI-EKIRLNEIPV 509 >gi|134096482|ref|YP_001101557.1| putative L-tartrate or fumarate dehydratase subunit alpha [Herminiimonas arsenicoxydans] Length = 291 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 22/279 (7%) Query: 25 PADYIAHLARAYETEQSPAAKDAIAQILTNSRMCAEGKRPICQDTGIVNVFLKIGMGVRF 84 P D + L+ + E +P+AK+ +A ++TN + +CQDTG+ + IG GV Sbjct: 24 PPDIKSGLSELVKHETAPSAKNILATMVTNISVAEAQDNLLCQDTGVPIYKITIGSGVEV 83 Query: 85 EGFSGSIADAVNEGVRRG-YSHPDNVLRASIVADPQFERKNTKDNT----PAVIHMELVP 139 +G++ + A+ G R HP LR+S+V RKN + PA I ++ P Sbjct: 84 DGYA--LKQAIRTGCERATREHP---LRSSVVH--PLTRKNEHTSCGIEIPA-ISIDFSP 135 Query: 140 G-NTVDVQIAAKGGGSENKTKFVMLNPS---DNLVDWVLKTVPTMGAGWCPPGMLGIGIG 195 + + + + KG GSEN + M P+ D + + + V G CPP ++G+GIG Sbjct: 136 TPDVMTILMIPKGSGSENNSFLKMAIPAEGIDAIKKFTVDCVLAAGGKTCPPTIVGVGIG 195 Query: 196 GTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNALGIGAQGLGGLTTVL 255 GT+E + +AK + + G EL +L +N LG+G QGLGG +T Sbjct: 196 GTSELCVALAKRASTRALGTHCADPAG-----AELEQQLSAAINGLGVGPQGLGGDSTAF 250 Query: 256 DVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAY 294 V I + TH PVA+ C + R +G A+ Sbjct: 251 AVHIELAATHITMNPVAVNMQCHSARRATATFTPAGVAF 289 >gi|134096483|ref|YP_001101558.1| putative L(+)-tartrate or fumarate dehydratase subunit beta [Herminiimonas arsenicoxydans] Length = 204 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 12/176 (6%) Query: 323 LTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRVIYYVGP-VDP 381 +++ ++ + T+ L + RDA M +G D + + P V Sbjct: 10 VSEAQIRQLRINDTVTLQQTLFGIRDATQIH---MFDRGRTTRFDLNGHAVIHTAPNVKK 66 Query: 382 VRDEVVGPAG-------PTTATRMDKFTDMMLEQTGLISMIGKSERGPAAIEAIKKHKSA 434 V PAG TT+ RM++FT ++ + G+ +IGK ++ A + Sbjct: 67 VEASDAYPAGYQPICIGTTTSDRMERFTRPLMTKNGVRIIIGKGGMREDSLAAFGELGGV 126 Query: 435 YLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFEVKDM-PVTVAVDANGISVHN 489 YL VGG+A L + I + + DL E++++F + + P+ VA+D++G S++N Sbjct: 127 YLAIVGGTAALETTWITQIEDVDLDDLNPESLWKFRIANFGPLLVAMDSHGGSLYN 182 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 971,801 Number of extensions: 39914 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 427 Effective length of database: 716,977 Effective search space: 306149179 Effective search space used: 306149179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)