BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1379.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094154|ref|YP_001099229.1| glutamate racemase [Herminiimon...   318   2e-88

>gi|134094154|ref|YP_001099229.1| glutamate racemase [Herminiimonas
           arsenicoxydans]
          Length = 284

 Score =  318 bits (815), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/279 (60%), Positives = 203/279 (72%), Gaps = 1/279 (0%)

Query: 20  TPMPTAADAAVGIFDSGVGGLSVLQHIHAALPREQLLYFADAGYAPYGEKTDEQIVERSL 79
           TP P AA+A +GIFDSGVG LSVL+HI A LP E LL FAD+GYAPYG K D +IVER+L
Sbjct: 6   TPDPVAAEAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKPDAEIVERTL 65

Query: 80  TIASFLIDQRIKALVVACNTATAAAIQAIRVHWPQLPVVGIEPGLKPAAQQTRCAIVGVL 139
            IA+FL+ +++KA+VVACNTATAAAI A+R  +P L VVG+EPGLKPAA  ++    GVL
Sbjct: 66  AIAAFLLTKKVKAIVVACNTATAAAIDALRQQYPDLIVVGVEPGLKPAAVFSKSGKAGVL 125

Query: 140 ATRSTLASKRFALLQAQMEAQYRVRYLPQACVGLVDLIEKGELYSPATVQLLERYLTPLL 199
           AT STLAS RF  L+ Q+     V +L QACVGLV+ IEKGEL SP T  +LERY+TPLL
Sbjct: 126 ATASTLASHRFIALRDQIAETTGVTFLTQACVGLVEQIEKGELSSPETAAMLERYVTPLL 185

Query: 200 EQGADTLVLGCTHYPFVRPAIESVCQRLVGAVPDIIDTGQAVTRQLQRLLETDAL-LTQA 258
             GADTL LGCTHYPFV+P IE++ +R       IIDTG+AV+RQL+RLL+   L   + 
Sbjct: 186 RGGADTLALGCTHYPFVQPLIEAIAERESAVPVTIIDTGEAVSRQLERLLQQRGLQRFEN 245

Query: 259 ATGSLAGFTTSSRSTLEQAFRGLLKLDPPVQALQPQAGA 297
             GSL  FTT S+S LE AF  LL L P V AL+ +A A
Sbjct: 246 MPGSLQAFTTGSQSALEHAFAKLLDLHPEVTALKAEAAA 284


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 523,215
Number of extensions: 20095
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)