BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1378.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095064|ref|YP_001100139.1| LuxR family transcriptional reg...    74   4e-15
gi|134095692|ref|YP_001100767.1| response regulator [Herminiimon...    65   4e-12

>gi|134095064|ref|YP_001100139.1| LuxR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 215

 Score = 74.3 bits (181), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 1   MNLKKVLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDF 60
           M  K  + V IADDH IV   L+  LA   +I +    ENG   I   +   C +++ D 
Sbjct: 1   MTTKNAIKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDI 60

Query: 61  AMPADDSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDE 120
           +MP     +  G  ++K+++ E P   +++ +         R  + G    +NK+    E
Sbjct: 61  SMP-----DRSGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAE 115

Query: 121 LINACLATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEI 180
           L+ A     + ++ Y    L  EL           L   L+  E + + +   G+++ +I
Sbjct: 116 LVTAIRQVAAGRK-YISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDI 174

Query: 181 CERLSRTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221
              L  +  TIS +++  ++K+ L  +A+L  YA    +++
Sbjct: 175 AAELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215


>gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 98/216 (45%), Gaps = 6/216 (2%)

Query: 6   VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65
           ++ + + DDH +V   ++  +A++P++ I+ E    +  I  ++    +IV+ D  MP  
Sbjct: 1   MIKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMP-- 58

Query: 66  DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125
              +  G  ++K++K E P   V++ +         ++ R G    + K    +EL+ A 
Sbjct: 59  ---DKSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTA- 114

Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICERLS 185
           + T      Y   ++   L           L   L++ E E+     +G  + +I + L 
Sbjct: 115 IQTILRGHKYISHTVAELLTAEVDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELC 174

Query: 186 RTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221
            +  T+ST++   ++K+ +  +A +I YA    +I+
Sbjct: 175 LSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNLID 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 398,583
Number of extensions: 14703
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)