BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1376.p (591 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095686|ref|YP_001100761.1| putative signal peptide [Hermin... 358 e-100 gi|134094568|ref|YP_001099643.1| outer membrane protein sensing ... 74 2e-14 >gi|134095686|ref|YP_001100761.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 589 Score = 358 bits (918), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/589 (35%), Positives = 317/589 (53%), Gaps = 21/589 (3%) Query: 6 SLAIAFLWCAADTAYAAYQVQIEAPAPVQSLLKDFLDISRYQDRDDISDEQLKFMMDTVG 65 +L AF A Y V I + SLL D L+I+R DD++ ++++ ++D Sbjct: 19 ALLFAFFLPLQVQAAPQYAVAINGAGSLTSLLTDNLEITRRLSTDDMNADEVQRLVDIAP 78 Query: 66 EQVRELSSTEGYFTP--TTKVSAQTEPAANGQQAVRRITLTVDPGPRTEINATDISVTGV 123 EQ+R L +TEGYF+P T + QT P ++ T+ PG T IN+ +I +G Sbjct: 79 EQIRSLLATEGYFSPAITQEFDQQTTPW--------QVRFTIVPGASTTINSVEIVFSGD 130 Query: 124 AARQDQATVARIRQDWSLPVGQPFRQEDWDKAKNTGLEQLQQKKYAAARIAASEARIDPQ 183 +++ R+R+ W LPVG FRQ+ WD+AK++ L+ L + Y AA I S+A IDP Sbjct: 131 VMQKNPQRTERLRRQWGLPVGDVFRQKAWDEAKSSLLKALLVRDYPAAAITHSQAHIDPD 190 Query: 184 EQQAELAVRYDSGPAFTLGALQITGTRRYPDAIIRNVNPLIIGEPYDVNRLLALQRQIQN 243 A L + DSGPAFT G LQI G +RY ++I +NP+ GEPY +L LQ ++Q+ Sbjct: 191 TNSAALTLTVDSGPAFTFGTLQIEGLQRYARSMIDELNPIRPGEPYSQEKLNELQARVQD 250 Query: 244 TPYFSNAIVAIDDDPEHPDQTPVKVQVTEFPTHRIRAGVGYSTDTGAQVEGRYSNYNMFN 303 T YF +A +D DP P+ P+++ + E R+ G+G+STD+GA+ + ++ N N Sbjct: 251 TGYFRSAFATVDIDPAQPNNVPIRLDLNENERKRLSLGLGFSTDSGARGQIKWLNRNFLG 310 Query: 304 RAYVFDSQVRLEQKRQYGTLSLAMPPDEKAFVNSLNTSYDRTQLEGVDLRSQQVGFKRAR 363 R + +SQ+R+++ + + +P + SL Y+ T G G + Sbjct: 311 RDWRLESQMRVDRDTRLLGSDVYLPAISNGWHPSLGAHYEYTDNAGEINNKILTGARLTS 370 Query: 364 TGENYDTTYSLTYYRDELSQENGSALPANTVVTPGKHRALVPGFAWSRRRVDNPIFPRQG 423 +N + +++++ D+ Q G AN AL+ F+++RRR+DN I PR+G Sbjct: 371 PDKNDEKVWAISFLADQ--QRIGDVYAAN-------REALIGSFSYTRRRIDNLIAPRRG 421 Query: 424 NLL-TLEAGFALKGLLTDQSFSRLYGRFKQFVPVGRRDIVVLRAELGGVFTKGSAGAVPP 482 + ++E GL +S +R+ GR VLR ++G VF S VP Sbjct: 422 GYVASIELSAGPAGLANKKSLARVVGRATWLSRNYGNFQTVLRGQVGQVF-GASRDTVPG 480 Query: 483 SLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFTQSWGAAVFYDVGAA 542 LLFRTGG+ +VRGY Y ++G QNG + AV S E T WGAAVF D G A Sbjct: 481 DLLFRTGGDQTVRGYGYNTLGVAQNGAIVGGTVSAVISAELVYDITPQWGAAVFTDAGNA 540 Query: 543 ADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKHQIRPHVSLGIAF 591 AD+W+ G G GARWRSP+G +NLDLAYG + H+ R H S+G F Sbjct: 541 ADSWNGFRLKQGSGVGARWRSPIGPVNLDLAYGHETHEPRIHFSIGYGF 589 >gi|134094568|ref|YP_001099643.1| outer membrane protein sensing stress [Herminiimonas arsenicoxydans] Length = 799 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 117/533 (21%), Positives = 195/533 (36%), Gaps = 69/533 (12%) Query: 101 ITLTVDPGPRTEINATDISVTGVAARQDQATVARIRQDWSLPVGQPFRQEDWDKAKNTGL 160 IT+ ++ G + + +DI + G ++ A + L G + E + + Sbjct: 268 ITININEGEKYTV--SDIKLEGEMFGRE----AELNSLLQLKKGDVYSGEKLTASTKSIS 321 Query: 161 EQLQQKKYAAARIAASEARIDPQEQQAELAVRYDSGPAFTLGALQITGTRRYPDAIIRNV 220 E++ YA A + A+ +ID ++++ V D G + + I+G + D +IR Sbjct: 322 ERMGNFGYAFANVNAN-PKIDREKKEVAFTVMIDPGKRVYVRNINISGNTKTRDEVIRRE 380 Query: 221 NPLIIGEPYDVNRLLALQRQIQNTPYFSNAIVAIDDDPEHPDQTPVKVQVTEFPTHRIRA 280 YD ++ + ++ YF++ + D P DQ + + VTE PT I Sbjct: 381 LRQFENSWYDGEKIKMSRDRVDRLDYFTDVTIETPDVPGKTDQVDINLGVTEKPTGNIML 440 Query: 281 GVGYSTDTGAQVEGRYSNYNMFNRAYVFDSQVRLEQKRQYGTLSLAMPPDEKAFVNSLNT 340 G G+S++ + G + N F V + + +S P ++ Sbjct: 441 GAGFSSNEKLTLSGGINQTNAFGSGNTIGIDVNTSRLNRTIAVSSTNPYFTDDGISRSYE 500 Query: 341 SYDRT----QLEGVDLRSQQVG--FKRARTGENYDTTY---------------------- 372 ++ RT + D R + G K +DT + Sbjct: 501 AFIRTTRPPTVNSGDYRIRTTGGNIKFGVPFSEFDTVFFGAGVERTEVEVYKGLAPSYSD 560 Query: 373 SLTYYRDELSQENGSALPANTVVTP-GKHRALVPGF----AWSRRRVDNPIFPRQGNLLT 427 S ++ ++ G LP + P GK A G AW R D+ + P +G Sbjct: 561 SPEVFQRYVNSIKGLPLPNDFSGYPDGKRSASATGIPLTAAWQRDNRDSALVPTKGRYQR 620 Query: 428 LEAGFALKGLLTDQSFSRLYGRFKQFVPV-GRRDIVVLRAELGGVFTKGSAGAVPPSLL- 485 + G D ++ R + + F P+ G + L E+ + KG G P Sbjct: 621 ANFEISPGG---DSTYFRTTYQHQWFKPLFGGSTTLALNGEVN--YGKGLGGKDYPIFKN 675 Query: 486 FRTGGNDSVRGYSYQSIG--NEQNGTVYPTKYLAVGSTEYQ------------RWFTQSW 531 F GG SVRGY SIG + NG + + E Q RWFT Sbjct: 676 FYAGGIGSVRGYEGSSIGPKAKSNGDPLGGSSRVIANAELQFPFPGSGTDRTLRWFT--- 732 Query: 532 GAAVFYDVGAA-ADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKHQIRP 583 F+D G AD + VG G W SP+G L L + + P Sbjct: 733 ----FFDAGNVYADGFGGGGMKTSVGIGLSWVSPLGPLKLSFGKALNANTDGP 781 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,134,548 Number of extensions: 47039 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 2 Length of query: 591 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 504 Effective length of database: 713,682 Effective search space: 359695728 Effective search space used: 359695728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)