BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1375.p
         (1340 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095687|ref|YP_001100762.1| hypothetical protein HEAR2515 [...   398   e-111

>gi|134095687|ref|YP_001100762.1| hypothetical protein HEAR2515
            [Herminiimonas arsenicoxydans]
          Length = 1319

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 376/1408 (26%), Positives = 635/1408 (45%), Gaps = 168/1408 (11%)

Query: 10   ASPPAQPPQRPARHGRRLAAWSGGTLAVLVLAAAGVALYATHTESGARLLWNGAVKALGG 69
            ++ P Q      R  RR+  W    +AVL +       +  ++E GA+   + A     G
Sbjct: 3    SNTPDQASANLPRRTRRI--WLP-LIAVLTITLGAGLTWLLNSERGAQFALSTASTLSNG 59

Query: 70   KLSGQLLGGTVADGLRLRALHYQDDKRILDIDRIDARWHLA-LLRRSLRLDYLRVGQVQL 128
             L  + + G +   L +  L  Q + + + +D I     L  LL   L +  L++G++ +
Sbjct: 60   VLQTRDVSGRLNGSLHIGQLGIQLENQNIVLDDIQLDTQLTKLLTGKLHVTALQIGKLGI 119

Query: 129  -NQQPSPSEPSTLPASLEIPLALEI-------GEISLERLNL-TQGTSSTELSRLKLHGN 179
             N+     E + LP S+ +PL L+I       GEI    LN+ T G  + +L       +
Sbjct: 120  VNKIDQVKEAAKLPDSISLPLRLQIDKVKVRGGEIGWGPLNVVTLGAFAFDL-------D 172

Query: 180  SDGVQHTLVLDSLTTPYGDATALLH--------LNGKRPFAIGGGLELTGAYQHGQLKEQ 231
             DG ++ L LD L+     ++A           L   +P+A+   +    +Y    +  +
Sbjct: 173  FDGKRYVLNLDQLSARGTASSAAFDGSFQGQATLATSKPYALQATI---ASYSEAHIDNR 229

Query: 232  YQLAA---QLSGSLQELG--IALTAGGDRLKGSADILATPLASVPLKRAKIDLQHINPQA 286
               A     L GSLQEL   I L  G   +KG A  +  P A   L    +  Q ++   
Sbjct: 230  NIGANGQLDLRGSLQELAAAINLQIGQATVKGQA--ILRPFAEQLLGATDLTAQALDLAV 287

Query: 287  FNAAAPAADLHLRADLAPPAGLTADAPLQVSGRIDIDNAHPGRLDEQRLPLLSASADLKL 346
             N   P   +H++   A             SG + ++N   G L++ RLPL     D   
Sbjct: 288  LNTDLPKTTMHIQLSAAENG----------SGNLTMENTAAGLLNDARLPLKKLRIDFTQ 337

Query: 347  DLQQ----QTLSRLDIRLLRDARIEGSGQFRPGSNEPGKQEPLSGQFKLRVSDLDLSQLH 402
            + +Q      L+ L        ++EG+G +  G+              L+   LD+ +L 
Sbjct: 338  NDEQFNFKHILAELGSTNQSAGKLEGNGHYAKGALA----------LNLQTDALDVKKLD 387

Query: 403  RQVRPTRLSGPVDLSLAPEAQQILLTLQD----SALKLHVDSMIGHDRVQVRQASLTAGK 458
             ++R +RLSG +D+  A   Q   L L +    S L L+  ++I  + + + +A L AG 
Sbjct: 388  SRMRASRLSGSLDMRHADGKQNFTLALSEPLKKSKLTLNAQALIADEGITISKAELRAGN 447

Query: 459  SRLETTGTLQTTGAMDYELKGRLLDFDPSAVLQAVAP-PAAPARKGRKSSAPVSKPIAAR 517
              +  +      G   ++ KG + +F     L+ +   P  PA                 
Sbjct: 448  GEMNASAHYALNGKQAFDAKGIVRNFQ----LRDLGDFPQLPA---------------LH 488

Query: 518  INMDFDAAGALSPELRLKLGFAIHDSSYGELPMSGRGDLNLVAMRLLPSRAHLQIAGNTL 577
            IN DF   GA  P L   +   I DS     P++G     L    LL S+  L    N L
Sbjct: 489  INGDFSLRGARLPTLETDIALHIRDSQLAGQPLNGEVQAQLHGDTLLVSKLLLNAGDNRL 548

Query: 578  DLDGSFGAPSDKLKLKIDAPQLAKLGYGLSGLLRVDGILAGTRQRPNLLASFQAEQLSF- 636
               G     + ++   + AP LA+LG G  G L++DG + G  Q+P ++A++Q  Q+   
Sbjct: 549  TAQGKLADDNARVVFALHAPTLAQLGSGFGGALQIDGEIRGKVQQPRIVATWQGRQIRLP 608

Query: 637  GAHKLHHLAGQSELHSNL-----------------AAGVASPDNRLA------------- 666
            G  ++    G++++  NL                 A G+ +   R+A             
Sbjct: 609  GPVQIDGTEGKADVALNLDASRSPSLLNSANVHATAHGINAGGERIATLSAQTQFALPAQ 668

Query: 667  ----LNVEGDGYSGPQAELAHLAIKLDGTYAKHALSLQAKGKLLDQSLDLNLAAHGQLTE 722
                + V  DG +G +       + + G+ ++HA+S      LL++     L A G L  
Sbjct: 669  APIAVIVRADGITGQRLRAESFTLDVSGSTSRHAVS----ATLLEREQKWQLTASGGLHS 724

Query: 723  KTRGHYGWAGSLDQFSNQGLPRIAMASPLALEASADGIEAGSTRIEIDRTALELKRLSYH 782
              R    W G+++  +  G     +A+P  L  S   ++    RI+ D   + L++   +
Sbjct: 725  GKR-ELRWQGAINTLNASGKVTAKLAAPAPLLVSQKVVQLDHFRIDSDHANIVLEQFIRN 783

Query: 783  QGRLASAGQVKALDVGRILELVQQLTGTPPPVKTDLVLDSDWDFTLAETASGYLQIARKS 842
            +  +A+ G  + + +  +L  +Q      P +  DL L   W+  L + A G   + R+S
Sbjct: 784  ERGIATRGTFEHVQIAPLLRSLQ----AAPAIAGDLKLAGAWNLNLYDQADGTFSVRRES 839

Query: 843  GDVRVTTSTGEATLGLSELQLRSQFQGEQMRVSGRVNAARVGTLELDGEIGLQRVDQV-- 900
            GD+ V  +     LGL+ L   +          GRV A  +      G+I +     +  
Sbjct: 840  GDI-VMHNNAAIALGLNTLNATASVS------KGRVTARLLADGRQSGQIDVSLNTNIGG 892

Query: 901  ---LALDAASPLNLSAKLDIPQVKRMGDLIGPQVNLDGKLAANLNAAGTLEQPKLSGAIN 957
                ++   +PL+   +++ P +  +G +I P +  +G L +++  AGT  QP+L+G + 
Sbjct: 893  ATRFSIAPNAPLSGRLRINTPTLGWLGPMISPTLMTEGSLQSDVTLAGTFAQPQLAGPVT 952

Query: 958  GDNLAVTEFDQGIQLKDGIVRIVMDSNVIDLRQIEFHGGSGTLRAGGKIQLGADNPDLNA 1017
             D L +   D GI LK G +R    ++ + +  + F    G+L   G + L  +   L  
Sbjct: 953  ADKLRLRFTDTGIDLKQGTLRSEFRNDQLLISNLGFQN-EGSLTISGPLSLVREQLALEL 1011

Query: 1018 SLTADHLELFASPDRRLMLSGEGKISNVNEQLRVDGKFTVDRALFDLPKSSAPKLGDDVV 1077
            ++ A+H +L    DR+L++SG   +   +   + +GKF V+    D+  S AP L DDVV
Sbjct: 1012 AIKAEHYKLIDRSDRKLVISGSSVVGWRDGSAKANGKFEVNSGFVDISASDAPTLSDDVV 1071

Query: 1078 IISRSGKNRVGAAASSQQKLEAATEKPASKFAPIINLAIDLGNDFRFRGSGADLLLRGDM 1137
            I  RS          SQ K          K    +++ I LG+  R RG G D LL G +
Sbjct: 1072 IAGRS---------DSQGK----------KAVVALDIEIGLGDGIRLRGRGIDALLVGQL 1112

Query: 1138 NVRSEPLSPLRATGTINVAEGSYEAFGTKLNIERGIINFTGPLSNPNLNILAMRRNQDVD 1197
            ++ +     LRA G + +A G+++A+G +L IE+G++ F+GPL+NP L+ LAMRR Q+V+
Sbjct: 1113 HLLASAGDNLRAQGNLRIASGTFKAYGRELAIEQGLLRFSGPLNNPALDFLAMRRGQEVE 1172

Query: 1198 AGVSVTGNVNQPRVQLVSEPNVPDDEKLSWMMFGH---GSDSSNIGQRTASSQALALVGN 1254
            AGV+V G V  PR+ LVSEP VPD EKLSW++ G    G+  S++G   +++ +L   G 
Sbjct: 1173 AGVAVRGTVLSPRITLVSEPTVPDAEKLSWLVLGRGLSGTTDSDLGVLQSAASSLLTQGA 1232

Query: 1255 MAG--KRITKDIGLDQFSIGSSDSGLTDDQVVNLGKAITQKITLGYEQSLQGAASIAKAT 1312
              G   +I    GLD FSIGSSDS L  +++V LGK I+ K+ + Y+Q L+ A+S+    
Sbjct: 1233 AGGLQSQIATAFGLDDFSIGSSDSNL-QERIVMLGKQISSKLYVSYKQGLESASSVLLLR 1291

Query: 1313 WQISRRWSVVARAGTVNGLNILFSQRYD 1340
            + ++ R ++   AGT + L++ ++  +D
Sbjct: 1292 YTLTPRITLEGEAGTSSALSLFYNFAFD 1319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 2,306,532
Number of extensions: 95524
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 1340
Length of database: 1,000,347
Length adjustment: 93
Effective length of query: 1247
Effective length of database: 693,912
Effective search space: 865308264
Effective search space used: 865308264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)