BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1374.p (519 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 333 2e-92 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 140 2e-34 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 135 7e-33 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 124 8e-30 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 123 2e-29 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 194/493 (39%), Positives = 288/493 (58%), Gaps = 5/493 (1%) Query: 12 TARLFVIVVCLIIALLEAWSAWRAYEVVIDESAREASNMALALVQQADQSFKEIDVVLQG 71 T +F++ V +++ + A +AW A I E+ SNMA AL Q A+ + ID +L Sbjct: 19 TLTVFIVFVTVLLVCILALNAWHARAEKIRETETATSNMAKALAQHAEDTVGGIDNLLVS 78 Query: 72 VQEHLQYDDAGAAGRQRTHDFMVSSVAALPQLAMLTVYDETGLAISSSQSNLEHRYIQDD 131 ++E L+ D +R + F+ V LP L L VYDE G +++SQ L D Sbjct: 79 MEEMLERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQWVANSQETLRTDLNNAD 138 Query: 132 --YFLHHQRVRTDRA-YIGKPMRSRVSGQWVATMSRRINHIDGSFAGVVVADIDLSHFQR 188 YF+ H R TD ++G P+RSR +G W+ T+SRR+ H DG+FAGVV+A I++ +F Sbjct: 139 REYFIFH-RTHTDSGPHLGPPIRSRSTGDWIITVSRRLEHADGNFAGVVLATINMQYFSA 197 Query: 189 YYEQFAIGRNGAILFGLNEGTVIFRQPLLSYSIGLDISKSTLMTQYLGKSEHGSFEMRSP 248 YY+ F IG+ GAI+ + GT++ R+P IG DIS + Y + G+ + + Sbjct: 198 YYKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFYKRQGSSGTAILTAN 257 Query: 249 RDDIVRVTSFQRCKLYPTFVAVALAKDDILEDWTRRLWIRSIVVLLLLIIIGYGGNRLVA 308 D R+ S++ YP +AVA + D++LE W + ++L+++ G RLV Sbjct: 258 IDRTERIYSYRHLDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSAMVLLLLWLLGARLVH 317 Query: 309 QVARRETAELEAIAARTELERLYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGE 368 Q+ RE A+ E AR +LER L A + D LT + NRR FD AL E AR R+ Sbjct: 318 QITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQT 377 Query: 369 SLSLIMVDVDHFKRYNDTYGHAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPN 428 SL+LIM+DVDHFK+YND YGH GD CLK+++ L + R GD+VARYGGEEF ++LP Sbjct: 378 SLALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPG 437 Query: 429 CNAASAAAIANRLVQAVRTLDIPHEGSPMGHVTISVGAASLASGKGAHVEARELIDIADA 488 + A AAA+A R+ A++ L++ H +P G VT S+G A+L + + ++L+ AD Sbjct: 438 TDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQN-SPQQLVHAADQ 496 Query: 489 ALYRAKEQGRDRA 501 ALY+AKE GR+++ Sbjct: 497 ALYKAKEDGRNQS 509 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 25/224 (11%) Query: 285 LWIRSIVVLL------LLIIIGYGGNRLVAQVARRETAELEAIAARTELERLYRTLEAQS 338 +WIR +V ++ + +IG+ + ++ R+ E + I + ELE L S Sbjct: 67 VWIRDVVHVMRNADGEVEALIGF-----MFDISERKKTEAKLIDLQKELETL-------S 114 Query: 339 QKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRYNDTYGHAAGDVCLKK 398 KDGLT V NRR FD + AE A + + LS+IM+D+D+FK+YND YGH GD CLK+ Sbjct: 115 FKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYFKQYNDHYGHIQGDDCLKR 174 Query: 399 VATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQAVRTLDIPHEGS--- 455 VA L S RR D AR+GGEEF L+LP + +A IA R + IPHE S Sbjct: 175 VANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLICKEKIPHEKSEVI 234 Query: 456 PMGHVTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRD 499 PM V++ VG + + K + I+ D LY+AK++GR+ Sbjct: 235 PMITVSLGVGTV-IPTDKDDPI---RFIEEVDKRLYQAKQRGRN 274 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 2/177 (1%) Query: 324 RTELERLYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRY 383 R LER LE D LT +++R+YF+ L +L + ESL ++ +DVD+FK + Sbjct: 133 RRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDYFKGF 192 Query: 384 NDTYGHAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQ 443 NDTYGH AGD L+KVA+ L RR + VAR+GGEEF ++ A A A L + Sbjct: 193 NDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAIMHAENLCR 252 Query: 444 AVRTLDIPHEGSPMGHVTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRDR 500 +VR LDIPH SP +TIS G + A E L++ AD+ALY+AK +GR++ Sbjct: 253 SVRDLDIPHAASPHQFLTISCGVVRMKPSSMAQPEV--LLEQADSALYQAKARGRNQ 307 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 124 bits (312), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 98/172 (56%), Gaps = 2/172 (1%) Query: 332 RTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRYNDTYGHAA 391 R LE ++ +D LT NRRYFD A E A +R G LS+ +D+DHFK+ NDTYGHAA Sbjct: 302 RELEEKTHRDVLTGAHNRRYFDEAFKHEFAVASRQGWPLSVAFLDIDHFKQVNDTYGHAA 361 Query: 392 GDVCLKKVATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQAVRTLDIP 451 GD L ++ + + R DI RYGGEEF L+ P A A + NR+ QAV + Sbjct: 362 GDKALIALSRIIATQI-RGSDIFVRYGGEEFVLLFPGTVAEEALIVLNRIRQAVASYCHT 420 Query: 452 HEGSPMGHVTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRDRAIQ 503 ++ + H+TIS G A H A L+ AD ALY AK+ GR++ I+ Sbjct: 421 YDTATF-HLTISAGLAFHMDEDMKHETAEGLLRTADNALYTAKQNGRNQIIK 471 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 128/232 (55%), Gaps = 16/232 (6%) Query: 270 VALAKDDILEDWTRRLWIRSIVVLLLLIIIGYGGNRLVAQVARRETAELEAIAARTELER 329 +AL + D+L +R LW L+ + G N L+ Q++ R A + R ++ Sbjct: 103 MALEETDLLVIPSRTLWK------LIDEVDGVARN-LLRQLSFRLRAANAQLRRREKVGE 155 Query: 330 LYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRYNDTYGH 389 YR L S DGLT ++NR + + L + + +G LSLIM+D+D+FK++ND YGH Sbjct: 156 FYRQL---SMLDGLTGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFKKFNDQYGH 212 Query: 390 AAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQAVRTLD 449 GD L +VA + + A R D RYGGEE +ILP+ NA + +A RL + +R Sbjct: 213 QMGDHAL-RVAAGVLNAALRPSDFAVRYGGEELTVILPDSNATTGRMVAQRLCERMREAV 271 Query: 450 IPHEGS-PMGHVTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRDR 500 + + P+ H+T S G A+L A + +L+ ADAALYRAKE GR++ Sbjct: 272 VFEDMHVPLPHLTASFGIATL----DAQHDQEDLVTRADAALYRAKEAGRNQ 319 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 916,775 Number of extensions: 35376 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 32 Length of query: 519 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 433 Effective length of database: 716,977 Effective search space: 310451041 Effective search space used: 310451041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)