BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1372.p (483 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 202 3e-53 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 135 4e-33 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 112 3e-26 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 97 2e-21 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 94 1e-20 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 202 bits (514), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 166/510 (32%), Positives = 256/510 (50%), Gaps = 57/510 (11%) Query: 10 LQVEHLTVFHGQQALVQDIDFAIPAGGVLTLLGESGSGKSLLAQAIMGNLPASLRCSGSI 69 L++++L V +V D+ F+I AG L+GESGSGK++ A +I+ L +G I Sbjct: 4 LEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSIL-RLNQDAAYAGRI 62 Query: 70 VIDGE----RSDAADAASRQCGWGRRIALLPQEPWLALDPTMTVARQIAETFELVSRPAP 125 + +G+ RS+AA A R G+ +A++ QEP AL+P T+ QIAE L Sbjct: 63 LFEGQDILQRSEAAMRAVR----GKDVAMIFQEPMTALNPLFTIGNQIAEGLML------ 112 Query: 126 DSQNDSLRAARSQATTLARQALASLGL---QQAGDKYPFMISGGMAQRVAFLATHAAGAP 182 + S R A +A L L G+ Q+ YP +SGG QR A Sbjct: 113 -HEGLSARIAALRAIEL----LDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPK 167 Query: 183 LLIIDEPTKGLDADRRGEVLALL-QAARQQGMSLLCITHDVWLARALGGQLAVMLEGRMV 241 LLI DEPT LD + +++ LL Q R++ M++L ITHD+ L R ++ VM +G +V Sbjct: 168 LLIADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLV 227 Query: 242 EQGPAQELLAAPRHDYTRRLLAADPACWPVSAHAGLRSGGEVIVEVEQVAKAFGQQQ--- 298 E +EL APR YTR+LLA+ P + L ++ E V F +Q Sbjct: 228 EVAATRELFTAPRETYTRKLLASQPQQLVNT----LNESAVPLLSAEHVRCTFDIKQGWF 283 Query: 299 ------LFSGISTRIHAGEIVAISGPSGAGKTSLGNIVLGLLQPDAGQVRRAAGLPRTAF 352 +S ++ GE + I G SG+GKT+LG +L L G P A Sbjct: 284 KTTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAM 343 Query: 353 QK------------IYQDPAAAFAPSVRLRQSLTDLVRLHQ-------LDWYCLESLLER 393 Q ++QDP A+ +P + Q + + + LHQ + ++LLE Sbjct: 344 QSDALRPLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLE- 402 Query: 394 MRVAPALLDRLPRQVSGGELQRIALARVLLMRPALIFADEPTSRLDPLTQQDVIALLVEQ 453 + + P ++ R P + SGG+ QRIA+ARVL+++P L+ DEPTS LD QQ V+ LL+E Sbjct: 403 VGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLEL 462 Query: 454 ARAVGSAVLLVTHDAHIVQCVADRQLPLGN 483 + A + ++HD +++ +A R + + + Sbjct: 463 QKKYELAYIFISHDLAVIRAMAHRVMVMKD 492 Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 24/271 (8%) Query: 5 AAIPALQVEHL-TVFHGQQ--------ALVQDIDFAIPAGGVLTLLGESGSGKSLLAQAI 55 +A+P L EH+ F +Q V D+ + G L ++GESGSGK+ L A+ Sbjct: 262 SAVPLLSAEHVRCTFDIKQGWFKTTPFVAVDDVSVQVRPGETLGIVGESGSGKTTLGLAL 321 Query: 56 MGNLPASLRCSGSIVIDGERSDAADAASRQCGWGRRIALLPQEPWLALDPTMTVARQIAE 115 + +S R SG+I DG+ +A + + + R+ ++ Q+P+ +L P T+ + + E Sbjct: 322 LR--LSSARVSGTIAFDGKPLNAMQSDALRP-LRARMQIVFQDPFASLSPRRTIEQIVGE 378 Query: 116 TFELVSRPAPDSQNDSLRAARSQATTLARQALASLGLQ-QAGDKYPFMISGGMAQRVAFL 174 L P +R A + A L +GL +YP SGG QR+A Sbjct: 379 GLAL---HQPQLGAAGIRKAVADA-------LLEVGLPPDIMARYPHEFSGGQRQRIAIA 428 Query: 175 ATHAAGAPLLIIDEPTKGLDADRRGEVLALLQAA-RQQGMSLLCITHDVWLARALGGQLA 233 L+++DEPT LD + +VL LL ++ ++ + I+HD+ + RA+ ++ Sbjct: 429 RVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVM 488 Query: 234 VMLEGRMVEQGPAQELLAAPRHDYTRRLLAA 264 VM +G++VE G Q +L+ P YT+RLLAA Sbjct: 489 VMKDGKVVESGMTQAVLSQPTEAYTQRLLAA 519 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 31/220 (14%) Query: 284 IVEVEQVAKAFGQQQLFSGISTRIHAGEIVAISGPSGAGKTSLGNIVLGLLQPDA----- 338 ++E++ + +F ++ + +S I AGE A+ G SG+GKT +L L Q A Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRI 62 Query: 339 ---GQ--VRRAAGLPRTAFQK----IYQDPAAAFAPSVRLRQSLTDLVRLHQLDWYCLES 389 GQ ++R+ R K I+Q+P A P + + + + LH+ L + Sbjct: 63 LFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHE----GLSA 118 Query: 390 LLERMRVAPALLDR------------LPRQVSGGELQRIALARVLLMRPALIFADEPTSR 437 + +R A LLD+ P Q+SGG+ QR +A L +P L+ ADEPT+ Sbjct: 119 RIAALR-AIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTA 177 Query: 438 LDPLTQQDVIALLVEQARAVGSAVLLVTHDAHIVQCVADR 477 LD Q ++ LL + R AVL++THD ++V+ ADR Sbjct: 178 LDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADR 217 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 138/259 (53%), Gaps = 16/259 (6%) Query: 14 HLTVFHGQQALVQDIDFAIPAGGVLTLLGESGSGKSLLAQAIMGNLPASLR-CSGSIVID 72 H T G V+D+ F++ G ++ L+GESGSGKS+ A +IMG + A + +G I++ Sbjct: 7 HFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLK 66 Query: 73 GERSDAADAASRQCGWGRRIALLPQEPWLALDPTMTVARQIAETFELVSRPAPDSQNDSL 132 + A + + G RIA++ Q+P + L+P + + Q+ E A + D Sbjct: 67 DQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMME--------AVLAHQD-- 116 Query: 133 RAARSQATTLARQALASLGLQQAGDK---YPFMISGGMAQRVAFLATHAAGAPLLIIDEP 189 ++ A +AR AL +G+ ++ YP SGGM QRVA L+I DEP Sbjct: 117 -VGKATARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEP 175 Query: 190 TKGLDADRRGEVLALLQA-ARQQGMSLLCITHDVWLARALGGQLAVMLEGRMVEQGPAQE 248 T LD +G++L +Q R+ G +L+ ITHD+ + L + VM G++VE G QE Sbjct: 176 TTALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQE 235 Query: 249 LLAAPRHDYTRRLLAADPA 267 +L P+H YT L+A+ P+ Sbjct: 236 VLEQPQHPYTHGLIASSPS 254 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 33/202 (16%) Query: 303 ISTRIHAGEIVAISGPSGAGKTSLGNIVLGL---------------------LQPDAGQV 341 +S + G+I+ + G SG+GK+ ++GL L P+A + Sbjct: 21 VSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDLRALSPEA--M 78 Query: 342 RRAAGLPRTAFQKIYQDPAAAFAPSVRLRQSLTDLVRLHQLDWYCLESLLER---MRVAP 398 RR G I+QDP P +R+ + + V HQ + R +RV Sbjct: 79 RRIRG---NRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARAMARDALVRVGI 135 Query: 399 ALLDR----LPRQVSGGELQRIALARVLLMRPALIFADEPTSRLDPLTQQDVIALLVEQA 454 A D P Q SGG QR+A+A LL +P LI DEPT+ LD Q ++ + + Sbjct: 136 ASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEMQKLC 195 Query: 455 RAVGSAVLLVTHDAHIVQCVAD 476 R G+A++ +THD ++ +AD Sbjct: 196 RESGTALIWITHDLSVIAGLAD 217 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 130/495 (26%), Positives = 205/495 (41%), Gaps = 70/495 (14%) Query: 6 AIPALQVEHLTVFHGQQALVQDIDFAIPAGGVLTLLGESGSGKSLLAQAIMGNLPASLRC 65 A+P +++ + + +G+ + DI IPA ++ L+G G GKS L G Sbjct: 5 ALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGS 64 Query: 66 SGSIVIDGERSDAADAASRQCGWGRRIALLPQEPWLALDPTMTVARQIAETFELVSRPAP 125 + + D R DA C RIA +PQ L PT++V + L A Sbjct: 65 ADVLGGDMRRKRHRDAV---CP---RIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDAA 118 Query: 126 DSQNDSLRAARSQATTLARQALASLGLQQAGDKYPFM------ISGGMAQRVAFLATHAA 179 + R + +L R S GL +PF+ +SGGM Q++ Sbjct: 119 ER--------RRRIDSLTR----STGL------FPFLTRPVGKLSGGMKQKLGLCCALIH 160 Query: 180 GAPLLIIDEPTKGLDADRRGEVLALLQAARQQGMSLLCITHDVWLARALGGQLAVMLEG- 238 LLI+DEPT G+D R + +L+ RQQ + I ++ A G V ++G Sbjct: 161 DPDLLILDEPTTGVDPLARAQFWSLIAGIRQQRPQISVIVATAYMDEAQGFDWLVAMDGG 220 Query: 239 RMVEQGPAQELLAAPRHDYTRRLLAADPACWPVSAHAG----------LRSGGEVIVEVE 288 R++ G QELLA + L AA A P G L + EV +E Sbjct: 221 RVLATGAPQELLA---QTGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVAIEAR 277 Query: 289 QVAKAFGQQQLFSGISTRIHAGEIVAISGPSGAGKTSLGNIVLGLLQPDAGQ-------- 340 + FG ++ RI GEI G +G GKT+ ++ GLL G+ Sbjct: 278 DLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLFGHEV 337 Query: 341 ------VRRAAGLPRTAFQKIYQDPAAAFAPSVRLRQSLTDLVRLHQLDWYCLESLLERM 394 RR G Y + + + + Q+L RL + + + ++M Sbjct: 338 DPHDIATRRRVG---------YMSQSFSLYSELSVMQNLVLHARLFNVPEAEVAARAQQM 388 Query: 395 RVAPAL---LDRLPRQVSGGELQRIALARVLLMRPALIFADEPTSRLDPLTQQDVIALLV 451 L +D LP ++ G QR++LA ++ P L+ DEPTS +DP+ + + LL+ Sbjct: 389 LTRFGLEEEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLI 448 Query: 452 EQARAVGSAVLLVTH 466 E +R + + TH Sbjct: 449 ELSRRDRVTIFISTH 463 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 23/247 (9%) Query: 25 VQDIDFAIPAGGVLTLLGESGSGKSLLAQAIMGNLPASLRCSGSIVIDG---ERSDAADA 81 V + I AG V+ L+GESG GKS L + +G S SGS + G E S AA+ Sbjct: 44 VDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGLHTLS---SGSRLWKGVNLEVSSAAER 100 Query: 82 ASRQCGWGRRIALLPQEPWLALDPTMTVARQIAETFELVSRPAPDSQNDSLRAARSQATT 141 +Q G + ++ Q+P+ +L+P M + I E AP + + A Q Sbjct: 101 RQQQLG----MQMIFQDPYASLNPRMRIQDVIGE--------APVAHG--MVPASEQTEY 146 Query: 142 LARQALASLGLQQA-GDKYPFMISGGMAQRVAFLATHAAGAPLLIIDEPTKGLDADRRGE 200 +AR L ++GL A ++P SGG R+ A LL+ DE LD + + Sbjct: 147 VAR-LLQTVGLDPALARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQ 205 Query: 201 VLALLQAARQQ-GMSLLCITHDVWLARALGGQLAVMLEGRMVEQGPAQELLAAPRHDYTR 259 VL L R + ++ L I+HD+ + R + ++ +M GR+VE P EL A P H YT Sbjct: 206 VLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTV 265 Query: 260 RLLAADP 266 LLA+ P Sbjct: 266 ALLASAP 272 Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 39/225 (17%) Query: 276 GLRSGGEVIVEVEQVAKAFGQQQLFSGISTRIHAGEIVAISGPSGAGKTSLGNIVLGL-- 333 G + EV+ V+QV + IHAGE+V + G SG GK++LG + +GL Sbjct: 33 GAKKSAEVVHAVDQV-------------TLTIHAGEVVGLVGESGCGKSTLGRMAVGLHT 79 Query: 334 ------------LQPDAGQVRRAAGLPRTAFQKIYQDPAAAFAPSVRLRQSLTDLVRLH- 380 L+ + RR L Q I+QDP A+ P +R++ + + H Sbjct: 80 LSSGSRLWKGVNLEVSSAAERRQQQL---GMQMIFQDPYASLNPRMRIQDVIGEAPVAHG 136 Query: 381 ------QLDWYCLESLLERMRVAPALLDRLPRQVSGGELQRIALARVLLMRPALIFADEP 434 Q ++ + LL+ + + PAL R P Q SGG+ RI +AR L ++P L+ DE Sbjct: 137 MVPASEQTEY--VARLLQTVGLDPALARRFPHQFSGGQRARIGIARALAVKPELLVCDEA 194 Query: 435 TSRLDPLTQQDVIALLVEQARAVGSAVLLVTHDAHIVQCVADRQL 479 + LD Q V+ L ++ + L ++HD +V+ V+DR L Sbjct: 195 VAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVL 239 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 99/219 (45%), Gaps = 41/219 (18%) Query: 285 VEVEQVAKAFGQQQLFSGISTRIHAGEIVAISGPSGAGKTSLGNIVLGLLQPDAGQV--- 341 +EV+ + K FG + +S AGE+ A+ GPSG GKT+L I+ GL QPD GQV Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 342 ----------RRAAGL---------PRTAFQKI----YQDPAAAFAPSVRLRQSLTDLVR 378 R G T F+ I PAA +++ +T L+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLE 122 Query: 379 LHQLDWYCLESLLERMRVAPALLDRLPRQVSGGELQRIALARVLLMRPALIFADEPTSRL 438 L QLDW L DR P Q+SGG+ QRIALAR L + P ++ DEP L Sbjct: 123 LVQLDW---------------LADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGAL 167 Query: 439 DPLTQQDVIALLVEQARAVGSAVLLVTHDAHIVQCVADR 477 D ++++ L + + VTHD VAD+ Sbjct: 168 DAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQ 206 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 20/246 (8%) Query: 9 ALQVEHLTVFHGQQALVQDIDFAIPAGGVLTLLGESGSGKSLLAQAIMGNLPASLRCSGS 68 +++V+++ G + D+ PAG + LLG SG GK+ L + I G G Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAG---LEQPDHGQ 58 Query: 69 IVIDGERSDAADAASRQCGWGRRIALLPQEPWLALDPTMTVARQIAETFELVSRPAPDSQ 128 +++DGE + A RQ G+ + AL MTV IA F L RPA Sbjct: 59 VLLDGEDASARHVRERQVGFVFQ--------HYALFKHMTVFENIA--FGLRVRPAATRP 108 Query: 129 NDSLRAARSQATTLARQALASLGLQQAGDKYPFMISGGMAQRVAFLATHAAGAPLLIIDE 188 ++S+ + + T L L + L D+YP +SGG QR+A A +L++DE Sbjct: 109 SESV--IKEKVTKL----LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDE 162 Query: 189 PTKGLDADRRGEVLALLQAARQQ-GMSLLCITHDVWLARALGGQLAVMLEGRMVEQGPAQ 247 P LDA R E+ L+ + ++ + +THD A + Q+ +M +G + + G + Sbjct: 163 PFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPK 222 Query: 248 ELLAAP 253 ++ P Sbjct: 223 DVYNNP 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 891,094 Number of extensions: 35673 Number of successful extensions: 357 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 69 Length of query: 483 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 398 Effective length of database: 720,272 Effective search space: 286668256 Effective search space used: 286668256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)