BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1371.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...    91   7e-20
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...    68   6e-13

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score = 90.9 bits (224), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 59  SLAHPLGYDQLGRSMLARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWVERVLA 118
           S  + LG D+ GR ML+ + +G R+S+ + + S   A + G+ +GL A + GG  E  + 
Sbjct: 71  SFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAIALLIGLTLGLCAGYFGGRTEGFIM 130

Query: 119 ALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASAPVEA 178
            +AD  L+ P +L+ L+L A    G   + + +    W  Y R  R+A+ +      +EA
Sbjct: 131 RVADIQLSFPPILVALILLALMGPGIDKIVIALIAVQWAYYARTARSAALVERKKEYMEA 190

Query: 179 SRLLGFGPGYIVRRHLMPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMM 238
           +R LG  P  IV RHL+P  LP L  +    +A A+   + L F+G+GL    P LG+++
Sbjct: 191 ARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSLGLLI 250

Query: 239 IELLPYYREAP-WLVGSPVLVLFLTLLALLLLSPQ 272
                Y      W+   P + L LT++++ L++ Q
Sbjct: 251 ANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQ 285


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score = 67.8 bits (164), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 58  PSLAHPLGYDQLGRSMLARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWVERVL 117
           PS  + LG D  GR ++ARL +G R+S+   L    +  + G++ G +  +  G  +   
Sbjct: 130 PSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTDLFF 189

Query: 118 AALADAVLALPGLLLVLLLAA-FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASAPV 176
               +   ++P L L+++ A+ F P     L +      W+     VRA          V
Sbjct: 190 QRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFG-WMGLSDYVRADFLRNRNLEYV 248

Query: 177 EASRLLGFGPGYIVRRHLMPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGV 236
           +A+R LG     I+ RH++P  L  + T + F ++GA+LA+++L F+G+G+   T  LG 
Sbjct: 249 QAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASLGE 308

Query: 237 MMIE 240
           ++ +
Sbjct: 309 LLAQ 312


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.144    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 460,306
Number of extensions: 16720
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)