BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1370.p
         (322 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096446|ref|YP_001101521.1| peptide ABC transporter membran...   135   2e-33
gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter me...    70   2e-13

>gi|134096446|ref|YP_001101521.1| peptide ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  135 bits (341), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 145/268 (54%), Gaps = 16/268 (5%)

Query: 70  AELGLDQPWFMALGQWWSRLLHLDLGTSQVTALPVLVEIAHQLGPTLRLSLLALALSLLF 129
           A  GLD+P +     +  + L  DLG S     P L  I  +L  TL L++ A+ ++++ 
Sbjct: 34  AAFGLDKPLWQQYFIFIQQALSGDLGRSFSFGTPALALILERLPATLELAIGAILIAIVL 93

Query: 130 GPTLGILAGLNPGGWLDRSTLALSVLLRALPSFLLGLILVLLFSVQLGALPAAGHVDHG- 188
           G  LG+ AGL P  W  +S +A+S+L  +LP+F +GL+L+++F+VQLG LP+ G  +   
Sbjct: 94  GIPLGLWAGLRPHSWSGKSIMAISILGFSLPTFWVGLMLIMVFAVQLGWLPSGGRGETSL 153

Query: 189 ---------------GILLPALTLALGLAAVSCRVARDAMVQVRASEYFAFALTKGLSPA 233
                           +LLPA  LAL   A+  R+ R    +    +Y  FA  KG+  +
Sbjct: 154 LFGVPVSFLTLDGLQHLLLPAFNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGVRNS 213

Query: 234 QALARHGVRNVAAPVVAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQG 293
           + +  H ++N+  P+V  + +Q   ++   ++ E++FAWPG+G  ++ +I   D P+I  
Sbjct: 214 RIIGVHVLKNILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVA 273

Query: 294 TALVLGLMFVLFNALVDTTCAFLDPRGR 321
             +++  +F+L N +VD   + LDPR R
Sbjct: 274 YLMLVVALFILINLIVDVAYSLLDPRVR 301


>gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 121/292 (41%), Gaps = 35/292 (11%)

Query: 53  GRYGYDMVTTEAALAVRAELGLDQPWFMALGQWWSRLL---HLDLGTSQVTALPVLVEIA 109
           GR G D    E    ++A  G D+P   A  ++W  L      DLG S      V   + 
Sbjct: 50  GRQGID---AERVAEIKALYGFDKP---ASERFWQMLKGFATFDLGKSFYHHKDVWDLVV 103

Query: 110 HQLGPTLRLSLLALALSLLFGPTLGILAGLNPGGWLDRSTLALSVLLRALPSFLLGLILV 169
            +L  ++ L L    L+      LGI   +  G   D  T  + ++  ++P F+LG+ L+
Sbjct: 104 SKLPVSITLGLWTFFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLL 163

Query: 170 LLF---------------SVQLGALPAAGHV-DH-GGILLPALTLALGLAAVSCRVARDA 212
           ++F               S     L   G V D+   I LP      G  AV   + ++ 
Sbjct: 164 VMFGGGSFVQWFPLRGLTSDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNT 223

Query: 213 MVQVRASEYFAFALTKGLSPAQALARHGVRNVAAPVV-----AYLGVQLVMLVEGVVLVE 267
            +     +Y   A  KGLS    L +H  RN   P+V     A++G        G +L+E
Sbjct: 224 FLDEIRKQYVLTARAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGA----FFAGSLLIE 279

Query: 268 TIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLMFVLFNALVDTTCAFLDPR 319
           T+F+  G+G     ++  RD P++ GT  +  L+ ++   L D    + DPR
Sbjct: 280 TLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPR 331


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 451,540
Number of extensions: 14047
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 240
Effective length of database: 730,157
Effective search space: 175237680
Effective search space used: 175237680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)