BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1369.p
         (515 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...    75   1e-14

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 130/309 (42%), Gaps = 29/309 (9%)

Query: 58  EVLQTLLEVDDAGQLRPALARTWEVSADGLQWRFALQAGRRYHDGSVVTPASVLACLQRA 117
            +   L+ VD  G+L P LA +W  + D   W F L+   ++HDGS  T   V+  L R 
Sbjct: 61  HIFDALVNVDANGKLVPGLATSWR-AVDATTWEFKLRRDVKFHDGSPFTADDVIFSLDRP 119

Query: 118 AV-----RPGVLQLASITAMSVQESVLV-VSLSKPFGPLPYLLTH---YSTQILAPSSFD 168
           A       P       I A  + +   V +  + P+GPL   ++     S +    +S D
Sbjct: 120 AKLTSSPGPFTAYTKQIVAKKIVDPYTVRLMTAAPYGPLALDMSTVFIVSKKAAEKASTD 179

Query: 169 AHGNVVAIVGSGPFRIQSISLPQQFDVERVAP--GPDKAIQRARYISVSRAETRTLLVQS 226
              N  A++G+GP++  S     + +V R     G      +  +  ++ +  R   + S
Sbjct: 180 DFNNGKALIGTGPYKFLSFKRGDRIEVTRNDQYWGGKSDWDKVTFRIITNSAPRLAALLS 239

Query: 227 GQAELAFSLDPPSIRALQESPRARLLSAMLPRTTILKLN------------AGHPF---- 270
           G  +    +    +  L+ + +      +  RT   +L+            +G P     
Sbjct: 240 GDVDAIEGVPTADLSRLKSNAKFSFAQKISWRTIFWELDQSPGASRYVTDKSGKPLPNNP 299

Query: 271 LADVRVRRAISLCMEREGIARALLRDPDLGATQLFPPSLTRWHDPQLAPLHTDLKQARRL 330
           L DVRVR+A+S  + R+ +    +    + A+ +  P +  ++D     ++ D + A++L
Sbjct: 300 LHDVRVRQAMSKAINRQALVERTMEGLAVPASNIVSPGIFGYNDALKVEVY-DPEGAKKL 358

Query: 331 LEEAGWRLG 339
           L +AG+  G
Sbjct: 359 LAQAGYPHG 367


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 957,985
Number of extensions: 38569
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 429
Effective length of database: 716,977
Effective search space: 307583133
Effective search space used: 307583133
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)