BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1368.p (705 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 235 6e-63 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 149 4e-37 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 119 4e-28 gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 69 9e-13 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 235 bits (599), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 204/694 (29%), Positives = 320/694 (46%), Gaps = 66/694 (9%) Query: 42 TGTGERQQYRQSSTSSATRTETPLQELPQSVQVVSRQLIDDLGAQRLDDVLLYVSGVAKQ 101 T TG YR + +S+AT+T+T L E Q+V VV+R I D GA L D L Y +GV + Sbjct: 68 TATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGV-RS 126 Query: 102 NNFG--GLWDNYSIRGFSGSDNGGMNILWNGFASNRGY---APPRDLANVESVDFLKGPA 156 + +G D+ +RG S ++ +G Y A D +E ++ L+GPA Sbjct: 127 DAYGLDSRTDSVLVRGASP------DVYIDGLRQANDYYTSAARPDPFTLERIEVLRGPA 180 Query: 157 AALYGNSEPGGTINVVSKKPQFKRANALDLSIGSNDSYRSSIDSTGAL--NSELAYRLNA 214 A YG GG +N+VSK+PQ + + + +G+ + D TG L + + YRL A Sbjct: 181 AMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVA 240 Query: 215 AVERRGSWRDDIHSQREFFAPALTWVLSDSTVLNYEAEFLR-------QKVPFDRGIVAV 267 + D + R AP+LTW + T L + + R Q +P+ G++ Sbjct: 241 VARNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGSTSQFLPW-AGMLTP 299 Query: 268 NGNLGVLPISRFLGEPGDGDVKMDNQNHLLTLEHRLNDNWHLRTGLFHKEGTLQGYSTEA 327 N N G++P SRF+GEPGD D Q+ EH+LNDNW R + + ++ A Sbjct: 300 NVN-GMIPTSRFIGEPGD-RYDTDRQSLGYLFEHQLNDNWTFRQNFRYAVNEVDYFTHYA 357 Query: 328 SALQADNAT------------LRRQRRYRDYGWHD---SSLQFELGGKLTTGSVGHEVLV 372 + D +T R RY D +++ L KL TG + H++L Sbjct: 358 DSFSTDPSTGLPGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLA 417 Query: 373 GTELDWMTLDQRMLRVNPTTAAPYAINIYNPVYGQPLPTPRANTDTSERQSSSAFYLQDQ 432 G LD+ R R + I++Y PVYG + A+ D Q YLQDQ Sbjct: 418 G--LDYT----RYQRDRQSGFGMDTIDVYAPVYGNGVVATLAD-DPQSVQRQIGLYLQDQ 470 Query: 433 ISLTQRWKLLAGIRADAFSSTLNNWRTSTITRQDKNAYSPRLGLTYLFTPSWSAYASASK 492 I + + W + AG+R D ++ L + ++ A + R+G+ YL WS Y S S+ Sbjct: 471 IKIGKNWIVSAGLRHDRVNNAL-----AGSEDEESRATTKRVGVMYLLENGWSPYVSYSE 525 Query: 493 SFRPNSGSDIHGRAFSPETSGAAEVGLKFQSADQRSGATLAVFDITKQNVLTADPSNPAF 552 SF P +G++ + + F P E G+K+ + S T A++ I ++N T DPSNP Sbjct: 526 SFTPVAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDPSNPLN 585 Query: 553 SIAAGEVRSKGVELDANAKLGHHWRLTGNLAYTDAYVSKDNTLAVGSRLLNVPRVSGSVL 612 I G+ +++GVEL+ A + + + YTD + +L VPR + Sbjct: 586 QIQVGQTKNRGVELEWKASITPTIDVLAHYNYTD----------LDEQLDEVPRHQAAAW 635 Query: 613 AVFEDALASGSPYGIGGGLNYVGD-RTGDQTGSFKLPAYLTARALAYWQLTPKMKLSLDV 671 + ++ S + +G G Y+ R G + P+ AL W T + +L+V Sbjct: 636 GKWRFSIGGVSGFALGAGARYMSSFRDGVAPTT---PSVTLLDALLSWD-TMNWRYALNV 691 Query: 672 DNLFNKRYYSSSYSSVWIMPGNERTATLALNVKF 705 +NL +K Y ++ S G R+A L KF Sbjct: 692 NNLTDKVYNATCLSRGDCWYGARRSAVLTATYKF 725 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 208/785 (26%), Positives = 342/785 (43%), Gaps = 121/785 (15%) Query: 5 ALRAAVLGALAMAQGLPPAWSADATAGSDSGLGQIVVTGTGERQQYRQSSTSSATRTETP 64 A R++ A+AMA + P + A + S L ++ V GT E Y+ + SS T+ P Sbjct: 12 ARRSSCSTAVAMAFVVLPGTTVYAQQVT-SVLPEVEVHGTTE--SYKADTVSSPKFTQ-P 67 Query: 65 LQELPQSVQVVSRQLIDDLGAQRLDDVLLYVSGVAK----QNNFGGLWDNYSIRGFSGSD 120 L Q++ V+ ++L+ G L + L GV +N D +RGF S Sbjct: 68 LLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRGFDTSS 127 Query: 121 NGGMNILWNGFASNRGYAPPRDLANVESVDFLKGPAAALYGNSEPGGTINVVSKKPQFKR 180 + I +G + RD+ N+E ++ KGPA A G P G+IN+ +K+P K Sbjct: 128 S----IFVDGVRDLGSIS--RDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKE 181 Query: 181 ANALDLSIGSNDSYRSSIDSTGALNSE--LAYRLNAAVERRG-SWRDDIHSQREFFAPAL 237 A + +S+GS D R + D L+ + A+R+N + G + RD + + R+ A A Sbjct: 182 AYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIAAAF 241 Query: 238 TWVLSDST--VLNYEAEFLRQKVPFDRGIVAVN----------GNLGVLP---------- 275 + L +T LNY + +P D G+ + N P Sbjct: 242 AFGLKTNTRTYLNY-LHVDQSNIP-DGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPF 299 Query: 276 --------ISRFLGEPGDGDVKMDNQNHLLT--LEHRLNDNWHL----RTGLFHKEGTLQ 321 S F G GD D D +LT +EH ++ + L R G + L Sbjct: 300 LNGASRVNSSNFYGTVGDFD---DVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLT 356 Query: 322 GYSTEASALQADNA------TLRRQRRYRDYGWHDSSLQFELGGKLTTGSVGHEVLVGTE 375 G+ A L N TL R + +D S Q L K TG+V H ++ G E Sbjct: 357 GFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHSLVTGVE 416 Query: 376 LDWMTLDQRML---------RVNPTTAAPYAINI-YNPVYGQPLPTPRANTDTSERQSSS 425 L + QR L N PY + YNPV T++ R ++ Sbjct: 417 LS--SEKQRSLGYAGLGTISAANLYNPNPYLVRTGYNPV--------GNGTNSEGRTNTL 466 Query: 426 AFYLQDQISLTQRWKLLAGIRADAF-----SSTLNNWRTSTITRQDKNAYSPRLGLTYLF 480 + YL D + L+ +W++ G+R D + SSTL N R +T+ + + +LG Y Sbjct: 467 SVYLFDTLELSPQWQINGGVRVDHYDTKYESSTL-NVRNATLNKSG-TLLNWKLGGLYKP 524 Query: 481 TPSWSAYASASKSFRPNSGSDIHGRA---------FSPETSGAAEVGLKFQSADQRSGAT 531 T S Y S + S +P GS+ + + P+ + AE+G K+ D+R G T Sbjct: 525 TEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLT 584 Query: 532 LAVFDITKQNVLTADPSNPAFSIAAGEVRSKGVELDANAKLGHHWRLTGNLA--YTD--- 586 A++ +N + + ++ F+ G+ R +GVEL ++ W+++ TD Sbjct: 585 TAIYRTDVKNEIEGNATD-GFT-QTGKKRVEGVELGVVGEITSAWQVSAGYTRMRTDVTA 642 Query: 587 -AYVSKDNTLAVGSRLLNVPRVSGSVLAVFEDALASGSPYGIGGGLNYVGDRTGDQTGSF 645 A V++D T S L P+ + + ++ L G + IGGG +V + G+ Sbjct: 643 GAIVNQDGT----SGLSYTPKQAFTAWTTYK--LPGG--FTIGGGARFVDALHKPKDGAV 694 Query: 646 KLPAYLTA----RALAYWQLTPKMKLSLDVDNLFNKRYYSSSYSSVW-IMPGNERTATLA 700 P ++ + A+A ++++ + L L++ NL +K Y +S S + PG ER+A L+ Sbjct: 695 GTPQFVESYWVYDAMASYEVSKNVSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLS 754 Query: 701 LNVKF 705 N+KF Sbjct: 755 ANIKF 759 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 148/627 (23%), Positives = 252/627 (40%), Gaps = 87/627 (13%) Query: 32 SDSGLGQIVVTGTGERQQYRQSSTSSATRTETPLQELPQSVQVVSRQLIDDLGAQRLDDV 91 S++ L ++VV E +++ S ++ PL+E P S+ V++ + + D + D Sbjct: 30 SENVLPEVVVMSDSESDGIARNA-SVGGFSDAPLRETPASISVITHEQMQDRSIRSATDA 88 Query: 92 LLYVSGVAKQNNFGGLWDNYSIRGFS---GSD--NGGMNILWNGFASNRGYAPPRDLANV 146 + Y + V N GL D +SIRGF+ GS+ GM +L + + N Sbjct: 89 VKYDASVQNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIP---------MENK 139 Query: 147 ESVDFLKGPAAALYGNSEPGGTINVVSKKPQFKRANALDLSIGSNDSYRSSIDSTG-ALN 205 E + LKG A G + GG +N V K+P + ++ L + ++D G + + Sbjct: 140 ERFEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGRSDD 199 Query: 206 SELAYRLNAAVERRGSWRDDIHSQREFFAPALTWVLSDSTVLNYEAEFLR---------- 255 YR+NAA S+ + +R+F + A W LS +L + ++ Sbjct: 200 KRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVPGFQ 259 Query: 256 -----QKVPFDRGIVA---VNGNLGVLPISRFLGEPGDGDVKMDNQNHL-LTLEHRLNDN 306 Q++P G+ A +N LP++ D+ N+L + E+ LN+ Sbjct: 260 LLGPAQRIP--TGVSAKTMLNNQSWSLPVT-------------DDTNNLGIKFEYELNEQ 304 Query: 307 WH--LRTGLFH--------------KEGTLQGYSTEASALQADNATLRRQRRYRDYGWHD 350 WH L+ F EG GY + + D LRR R Sbjct: 305 WHTTLQANKFELRRDDAVALASGCVAEGLSPGYCADGTFNMYD---LRRDNDKRTV---- 357 Query: 351 SSLQFELGGKLTTGSVGHEVLVGTELDWMTLDQRMLRVNPTTAAPYAINIYNPVYGQPLP 410 S Q L GK G++ H++ +G T+++R N + +IY P Y Sbjct: 358 MSTQAMLQGKFNAGTIKHDLTLGMS----TMNRRDNYANFLFESAGTGSIYYPKYNPLTL 413 Query: 411 TPRANTDTSERQSSSAFYLQDQISLTQRWKLLAGIRADAFSSTLNNWRTSTITRQDKNAY 470 P + + ++QD ++L ++KL AG+R T DK+ Sbjct: 414 GPTNPVSLRRKDEERSVFVQDVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFL 473 Query: 471 SPRLGLTYLFTPSWSAYASASKSFRPN----SGSDIHGRAFSPETSGAAEVGLKFQSADQ 526 P + L + +WS Y + S+ P SG P S E+G+K + Sbjct: 474 LPNVALVFSPQSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQD 533 Query: 527 RSGATLAVFDITKQNVLTADPSNPAFSIAAGEVRSKGVELDANAKLGHHWRLTGNLAYTD 586 S A A+F I + N T+ + + AG+ +G+EL A + + L ++ Sbjct: 534 ISVAA-ALFQIHRDNNYTSGLN----YVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQ 588 Query: 587 AYVSKDNTLAV-GSRLLNVPRVSGSVL 612 A+ V G R+ NVP + +V Sbjct: 589 AFAENTGDARVEGKRIGNVPVLKSAVF 615 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 127/589 (21%), Positives = 240/589 (40%), Gaps = 108/589 (18%) Query: 55 TSSATRTETPLQELPQSVQVVSRQLIDDLGAQRLDDVLLYVSGVAKQNNFGGLWDN-YSI 113 T SA+R E+ E P V++ Q I D GA +++ + ++GV + + G D+ + Sbjct: 43 TVSASRFESA--EAPIGATVITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLDL 100 Query: 114 RGFSGSDNGGMNILWNGFASNRGYAPPRDLA-----NVESVDFLKGPAAALYGNSEPGGT 168 RGF S N + I +G + P ++ +VE ++ ++G ++ LYG GGT Sbjct: 101 RGFGSSSNQNVAIFVDGIRISENELQPAVMSAIAIESVERIEVVRGGSSVLYGEGATGGT 160 Query: 169 INVVSKKPQFKRANALDLSIGSNDSYRSSIDSTGALNSELAYRLNAAVE----------- 217 I +++K+ K G++ S + I + G + E+ LNA + Sbjct: 161 IQIITKRGSTK---------GTHGSVVAEIGNRG--HEEIRASLNAGWDGFSIDANLGAL 209 Query: 218 RRGSWRDDIHSQREFFAPALTWVLSDSTVLNYEAEFLRQKVPFDRGIVAVNGNLGVLPIS 277 R ++R + ++E F+ + W L + V + + RQ + G L +S Sbjct: 210 RTDNYRANNELRQENFSGGVQWALQNGKV-GFRVDSARQDLRLP----------GSLTLS 258 Query: 278 RFLGEPGDG-----DVKMDNQNHLLTLEHRLNDNWHLRTGLFHKEGTLQG-YSTEASALQ 331 ++L P + +D+ + ++ R N L L ++E T +G +S S + Sbjct: 259 QYLQNPRQTLKPTENGSLDSDRYTFFVDQRYG-NLELAADLSYREKTSKGDFSGFLSNAE 317 Query: 332 ADNATLRRQRRYRDYGWHDSSLQFELGGKLTTGSVGHEVLVGTELDWMTLDQRMLRVNPT 391 ++ + +Y GS +E++VG + D + + Sbjct: 318 SEVKQFSPRAKYVS----------------NFGSTRNELIVGMDFS----DSKRFTQSSF 357 Query: 392 TAAPYAINIYNPVYGQPLPTPRANTDTSERQSSSAFYLQDQISLTQRWKLLAGIRADAFS 451 A AN D Q S A Y +++I ++ AG R + F Sbjct: 358 NGA-------------------ANADEHTSQQSMAIYGRNEIRFGN-MRVAAGARHEKFD 397 Query: 452 STLNNWRTSTITRQDKNAYSPRLGLTYLFTPSWSAYASASKSFRPNSGSDIHGRAF---- 507 L R T Q + + L +Y TP S + A KS+R +++ AF Sbjct: 398 QDL---RAGTSYNQSFSLNAFDLNASYELTPLVSLFGKAGKSYRV---ANVDENAFLSKP 451 Query: 508 -SPETSGAAEVGLKFQSADQRSGATLAVFDITKQNVLTADPS---NPAFSIAAGEVRSKG 563 +P+ S E+G F + + + A VF ++ + DP+ ++ + +G Sbjct: 452 LNPQRSNDLELGGLFGNDNNKLIAK--VFRHKLKDEIFYDPTAGGGVGANVNLDRTKRQG 509 Query: 564 VELDANAKLGHHWRLTGNLAYTDA-YVSKDNTLAVGSRLLNVPRVSGSV 611 VE++ A+L + L+ L + A + N+ G ++ VP+ + +V Sbjct: 510 VEIEGRARLSSEFFLSAVLQHVSAKFTDGPNS---GKEMVLVPKNTATV 555 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.131 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,375,288 Number of extensions: 59175 Number of successful extensions: 172 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 5 Length of query: 705 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 617 Effective length of database: 710,387 Effective search space: 438308779 Effective search space used: 438308779 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)