BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1367.p
         (328 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093369|ref|YP_001098444.1| magnesium/cobalt transporter Co...   273   1e-74

>gi|134093369|ref|YP_001098444.1| magnesium/cobalt transporter CorA
           [Herminiimonas arsenicoxydans]
          Length = 321

 Score =  273 bits (697), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 211/323 (65%), Gaps = 2/323 (0%)

Query: 6   MIVNCTVYKKGKKLREISLDEISDVLEEEGTFVWLGLLEPNVELMNKIKEEFCLHELAVE 65
           M++NC  Y+ G KL +I+++EISD L+    FVW+ L +     + +++EEF LH+LAVE
Sbjct: 1   MLINCVAYQDGNKLSDITIEEISDYLKRPNCFVWVALKDAEPAELEQMQEEFNLHDLAVE 60

Query: 66  DAYAAHQRPKIEEYGDTLFVVLHTAQLAGGEVLFGETHILTGPRFVVTVRHGASRSYAKV 125
           DA   HQRPK+EEYGD+LFVV+ TA++  G V  GE  I  GP +V++VR+ +S+ +  V
Sbjct: 61  DAMKGHQRPKVEEYGDSLFVVVKTAEMVEGTVHIGELDIFVGPNYVLSVRNRSSQGFLGV 120

Query: 126 REHCEMLPERLVRGPSFVLYSIMDFVVDNYRPIMDDLEAKFSQYEEQLFNPGTISGKAYL 185
           R  CE  PE+L +G +FVLY++MD VVD Y P+++ LE++    E ++F+ G  S +A +
Sbjct: 121 RARCEQEPEQLRKGSAFVLYALMDAVVDRYFPVVEALESELEFIEGKIFHKG--SQRANI 178

Query: 186 QELYQLKRQLIRLRSVASPLLDVCTQLLRFHEGLITKDGKAYFRDIYDHVVRFIDTGDRL 245
           + LY+LKR+++ L+ V +PL++   +L       + +  + YFRD+ DH+ R     D  
Sbjct: 179 ERLYELKREVVMLKHVVAPLMESVGKLYGGRVPSLCESTREYFRDVGDHLYRINALADAF 238

Query: 246 REMVESAVQINLAQVTIHQNEIVQTLAGWGAILAIPTMIFSLYGMNFAHMPGLSWQWSFP 305
           RE + +A+Q+NL+ VTI ++E+ + LA W AI A+ T  F L+GMNF  MP L W++ +P
Sbjct: 239 RETITTAIQVNLSMVTIEESEVNKRLAAWAAIFAVATAFFGLWGMNFKFMPELEWKYGYP 298

Query: 306 LVLGGIITACTLLWRRLRKAGWL 328
           + +  +   C  L+ R RK+GWL
Sbjct: 299 VSVLMVAGVCGYLYYRFRKSGWL 321


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 642,312
Number of extensions: 26403
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 246
Effective length of database: 730,157
Effective search space: 179618622
Effective search space used: 179618622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)