BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1366.p
         (302 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094661|ref|YP_001099736.1| hypothetical protein HEAR1438 [...    87   1e-18

>gi|134094661|ref|YP_001099736.1| hypothetical protein HEAR1438
           [Herminiimonas arsenicoxydans]
          Length = 299

 Score = 87.0 bits (214), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 146/289 (50%), Gaps = 22/289 (7%)

Query: 16  AVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARSTWAAR--AQIRPHLGKI 73
           A L+WAGN ++ +    ++ P  ++F+RW +AA+++ PF   ++W  R  + +  H  + 
Sbjct: 16  APLMWAGNAIVGRSINALVPPLTLNFFRWSIAAIILLPF---ASWIFRRNSALWTHWRRF 72

Query: 74  LVLALLGMVLYQSLAYFAAATASATSMGIISSLMPLMTLVLSIKLLAEPPTVGTLAGGIL 133
            +L LLG+ LY SL Y A  T+S  ++ ++++ MP+  L++         +     G ++
Sbjct: 73  ALLGLLGVGLYNSLQYLALKTSSPINVTLVAASMPVWMLMIGSMFFGVRVSAKQALGAVM 132

Query: 134 SLFGLAVLIGRGHPLALFEQGVVAGDLLMLAATVAYGLYGVMLRRWALPLRTWQLL--YL 191
           S+ G+ +++ RG    L    +V GD+LM+ A + +  Y  +L    LP    Q+   ++
Sbjct: 133 SIAGVLLVLSRGELQQLLALRLVPGDILMILAAIIWSFYSWLL---TLPKDPAQIRANWI 189

Query: 192 QVLMATVLLFPGFLLGHHS--PITRANLPI---------LLYAGIGASIISQFLWMRGVV 240
             L+A V  F     G  S    T A+  I         L++  IG +II+   W  GV 
Sbjct: 190 AFLLAQV-AFGAVWSGAFSAAEWTFADPHIVWGWSLIAALIFVAIGPAIIALRCWGLGVQ 248

Query: 241 HLGASRCAIFVNLMPIFTVIIAVLALGESLHGYHALGGSITLVGVMLAQ 289
            +G +    F NL P+F  +++   LGE+ H YH L   + + G++++ 
Sbjct: 249 RVGPTVAGFFSNLTPLFAALMSAAFLGETPHLYHGLAFLLIVGGIVVSS 297


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 573,906
Number of extensions: 23254
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 221
Effective length of database: 733,452
Effective search space: 162092892
Effective search space used: 162092892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)