BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1364.p
         (613 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096139|ref|YP_001101214.1| para-aminobenzoate synthase Pab...   685   0.0  
gi|134093488|ref|YP_001098563.1| anthranilate synthase component...   132   7e-32

>gi|134096139|ref|YP_001101214.1| para-aminobenzoate synthase PabB
           [Herminiimonas arsenicoxydans]
          Length = 617

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/615 (59%), Positives = 436/615 (70%), Gaps = 14/615 (2%)

Query: 3   DCFALLDDHLASPADPRSRLYSGHLRTLACHQAEDFPALLAEMQTALAAGQHAVALWSYE 62
           DCFALLDD  AS    RSRLYS H  TL+C +A+  P LL +MQ  L  G+ AV L++YE
Sbjct: 12  DCFALLDDCDASADQARSRLYSAHAGTLSCRRADQLPDLLQQMQAHLLHGRFAVVLFAYE 71

Query: 63  LGAALQGLPHRPLAEPLARVLLFSRCQRLTAAEVDDWLAAQAEGDSADIVHLRSSVDQAS 122
           LGAAL G+      +PLA +LLF RC++L+A +V  WLA Q     A I ++ + +DQA 
Sbjct: 72  LGAALHGIAPHADDQPLAEILLFDRCEKLSAQQVTSWLAQQESPTPAGIANVHADIDQAD 131

Query: 123 FSAAIDRIRDYIAAGHTYQVNYTYRLHFDVHGDAISLYRRLRARQPVPYGALLRDEQGGM 182
           F AA+ RI DYIAAG TYQVNYTYRL FD +G   +LYRRLR RQPVPYGAL+    G  
Sbjct: 132 FDAALARIHDYIAAGDTYQVNYTYRLRFDAYGSLHALYRRLRERQPVPYGALIALPDGRA 191

Query: 183 VLSCSPELFVTHQDGLLQAKPMKGTARALPDGAADAETLNAQRAQALAADDKNRAENLMI 242
           VLS SPELFV H+ G L  +PMKGTA A  D   D  +     A ALA+D KNRAENLMI
Sbjct: 192 VLSLSPELFVQHEQGRLTVRPMKGTAAASGDSQQDQVS-----AHALASDPKNRAENLMI 246

Query: 243 VDLLRNDLGRVALPGSVQVPQLFEVSRYGQVLQMTSTIHARLRPEATLVDTLAALYPCGS 302
           VDLLRNDLGR+A  GSV V +LF+V RY  VLQMTST+HA+LR    L +   ALYPCGS
Sbjct: 247 VDLLRNDLGRIAEVGSVVVDKLFDVQRYSSVLQMTSTVHAQLRAGLALPEIFEALYPCGS 306

Query: 303 ITGAPKRRTMEIIDELETEARGLYTGAIGWFDAPRAGSHAIGDFCLSVPIRTLQLQP-PQ 361
           ITGAPK RTM+II ELE   RG+YTGAIGWFD P+  + A+G+FCLSVPIRTLQLQ   Q
Sbjct: 307 ITGAPKHRTMQIIRELEASPRGIYTGAIGWFDPPQ-DAQAVGNFCLSVPIRTLQLQSQSQ 365

Query: 362 HG--LRRGVMGVGAGIVHDSQAASEFAECQLKAAFLTGLEKDFSLFETLYASHGT-CRHL 418
           +G  +RRG MGVGAGIVHDSQ  +E+ EC+LKA FLTG+  +F LFET+YA+    CRHL
Sbjct: 366 NGQRIRRGEMGVGAGIVHDSQTQAEYEECRLKARFLTGMPGEFELFETIYATRAEGCRHL 425

Query: 419 DLHLQRLQASAGALGFAFDEAMIRQQLADTCAGLAADFPADQAHRLRLALDAQGRITLQH 478
           + HLQRLQ SA   GFA D A+IR QL D CAGLA +     A RLRLAL A G  T+  
Sbjct: 426 ERHLQRLQRSADYFGFACDAAVIRTQLRDACAGLAENL----ACRLRLALQADGNCTIHT 481

Query: 479 APLAPLAGPVKVFLADTATDSSELFLRHKSTRRARYDAAWKEAERRGGFDLLFFNERDEL 538
           APLA L  PVK+ LA+  TD+ ++FLRHK+T R+ YDAAW+ AE++G FD LF N   +L
Sbjct: 482 APLAALELPVKILLAEHPTDAGDIFLRHKTTIRSVYDAAWRAAEQQGAFDQLFCNSAGQL 541

Query: 539 TEGGRSNVLVHIDGRWRTPPLAAGLLPGVMRQVLLADPTWDAIEAVITRADLLRAQQIVV 598
           +EGGRS V V + GRW TPPL+AG+LPGVMR VLL DP W A E ++T  DL  A +++V
Sbjct: 542 SEGGRSTVFVKLAGRWYTPPLSAGVLPGVMRAVLLDDPAWQAQEKILTLDDLRAADEVIV 601

Query: 599 CNALRGALPAILVRP 613
           CNALRG LPA +V P
Sbjct: 602 CNALRGVLPAQIVWP 616


>gi|134093488|ref|YP_001098563.1| anthranilate synthase component I
           [Herminiimonas arsenicoxydans]
          Length = 498

 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 144/279 (51%), Gaps = 23/279 (8%)

Query: 119 DQASFSAAIDRIRDYIAAGHTYQVNYTYRLHFDVHGDAISLYRRLRARQPVPYGALLRDE 178
           ++  + AA+ + ++Y+ AG   QV    R+        ++LYR LR+  P PY  +    
Sbjct: 220 NKNDYLAAVAKAKEYVMAGDLMQVQIGQRIKKPYVDAPLTLYRALRSLNPSPY--MYFYN 277

Query: 179 QGGM-VLSCSPELFVTHQDGLLQAKPMKGTARALPDGAADAET--LNAQRAQALAADDKN 235
            G M ++  SPE+ V ++   + +   K T R L       ET   +A  A+ L AD K 
Sbjct: 278 FGDMQIVGASPEILVRNET--VASGKKKITIRPLAGTRPRGETPEKDAILAKELLADPKE 335

Query: 236 RAENLMIVDLLRNDLGRVALPGSVQVPQLFEVSRYGQVLQMTSTIHARLRPEATLVDTLA 295
            AE++M++DL RND+GR+A  GSV V     + +Y  V  + S +   L+   + +D L 
Sbjct: 336 IAEHVMLIDLARNDIGRIAETGSVLVTDKLVIEKYSHVQHIVSNVEGTLKDGLSNLDVLK 395

Query: 296 ALYPCGSITGAPKRRTMEIIDELETEARGLYTGAIGWFDAPRAGSHAIGDFCLSVPIRTL 355
           A +P G+++GAPK R MEIIDELE   RG+Y GA G+           G+  L++ IRT 
Sbjct: 396 ATFPAGTLSGAPKVRAMEIIDELEPTKRGIYGGACGYLSFG-------GEMDLAIAIRT- 447

Query: 356 QLQPPQHGLRRGVMGV--GAGIVHDSQAASEFAECQLKA 392
                   ++ G++ V   AGIV DS    E+ E + KA
Sbjct: 448 ------GVIKDGMLYVQAAAGIVADSVPEMEWQETENKA 480


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,163,960
Number of extensions: 48584
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 613
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 526
Effective length of database: 713,682
Effective search space: 375396732
Effective search space used: 375396732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)