BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1363.p (513 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 183 1e-47 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 182 3e-47 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 170 1e-43 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 162 4e-41 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 142 4e-35 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 183 bits (465), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 150/444 (33%), Positives = 222/444 (50%), Gaps = 37/444 (8%) Query: 58 PRDLAADGK------WWEMFGDPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAY 111 P D+ DG W + F D +L LIAQ +N++L R+AV V+ +R+AY Sbjct: 51 PSDVNQDGAAAAAMGWRDYFTDARLQDLIAQALENNRDL-------RAAVLRVEEARAAY 103 Query: 112 S-------PTLSASAGASRASSGSAGSSSGNGGSTNGASSGGVRNSYTFSL-TAAWEPDL 163 P ++A AG+ RA + S +G ++ Y SL A+WE D Sbjct: 104 GIQRAEQFPAIAAQAGSERAHVPADLSLTGKPAMSS---------QYHVSLGLASWEIDF 154 Query: 164 WGKVRRDVESSQTSAQASAADLAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRS 223 WG+VR +++ + AS A +S AQVA YL L LD + L T+ + + S Sbjct: 155 WGRVRSLRDAALENYLASDEARRAVTISLVAQVANSYLALCELDERIALARLTIASREES 214 Query: 224 LQVTQNQYAAGMVAKSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKT---PAEF 280 L++ + G ++ ++ Q QT L AQA RA +A+ LLVG T PA Sbjct: 215 LRIFTRRVEVGSTSRLNLTQVQTLLSQAQALGAQLEQARALQANALILLVGVTLELPATS 274 Query: 281 S-LPRRPLTAVAPPVPQGIPSMLLERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSAS 339 S L R + P+ G+PS LL RRPD+ AAE ++ AA+A+IG A+AA+FP + L+ S Sbjct: 275 SRLDERQMLL---PLQPGLPSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGS 331 Query: 340 GGYQSSSFSDWFTLPGRVWSLGPQLAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTA 399 G S+ F R W+ P ++ +FD G R+ A A D VA Y++T+ A Sbjct: 332 FGTASAELDGLFAAGSRAWTFAPSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAA 391 Query: 400 FQDVEDNLAALRILEQEAAVQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAE 459 F+DV D LAA + L Q+ + AL + L +Y G +Y++V+ AQ L AE Sbjct: 392 FRDVADALAARQWLAQQLLIAQAALTTQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAE 451 Query: 460 LTSLNILNRRMAASVLLAKALGGG 483 + I +++ V L ALGGG Sbjct: 452 QQLVQIRRALLSSQVSLYAALGGG 475 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 182 bits (462), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 240/478 (50%), Gaps = 18/478 (3%) Query: 13 LKPLLAVLLASCALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAADGKWWEMFG 72 +K L +LA+ L+ACS+ P Y RP P A + A + W F Sbjct: 2 IKQLTLTVLAASVLSACSMAPKYTRPD---APVAADYPAASAAADKQQRAHETGWRNFFP 58 Query: 73 DPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASRASSGSAGSS 132 D +L ALI +N++L +A A A + P L+ + SRA + ++ S Sbjct: 59 DQRLQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISP 118 Query: 133 SGNGGSTNGASSGGVRNSYTFSLT-AAWEPDLWGKVRRDVESSQTSAQASAADLAAARLS 191 +G V ++Y L+ A++E D +G+V +++ S A+ AA +S Sbjct: 119 TG---------IDSVSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHIS 169 Query: 192 AQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVIQAQTQLKSA 251 A+VA+ YL R Q L + T+++ + + + ++ G + D+ Q + L+SA Sbjct: 170 LVAEVAKAYLAERAFAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSA 229 Query: 252 QASALDNGVTRAQVEHAIALLVGKTPAEFSLPR-RPLTA--VAPPVPQGIPSMLLERRPD 308 + + + RAQ +A+ LLVG+ F P +PL+A + +P G+PS LL +RPD Sbjct: 230 RVAQVTLARQRAQALNALTLLVGQPLTGF--PEAQPLSAQNIVTDIPAGLPSDLLTQRPD 287 Query: 309 VAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLGPQLAQTI 368 + +AE+ + AANA IG A+AA+FP ++L+A G SS+ S+ F R W+ PQL I Sbjct: 288 IRSAEQSLLAANANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPI 347 Query: 369 FDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQHEALLAAR 428 FD G +A + + +A Y++++ +AF++V D L A +LE++ Q A Sbjct: 348 FDAGRNSANLTLSEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQA 407 Query: 429 QAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDE 486 + + L +++ G S ++V+ AQ SAE + R+ ++ L ++LGGG E Sbjct: 408 ERLKLADQRFQNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGLTE 465 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 149/490 (30%), Positives = 233/490 (47%), Gaps = 36/490 (7%) Query: 14 KPLLAVLLASCALAACSVGPDYVRPQMDTG-----------PAVFKEGQNWK---PAQPR 59 KPLL+ L + LA G + PQ+ P GQN A Sbjct: 3 KPLLSTLALAITLAVS--GCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATKE 60 Query: 60 DLAADGKWWEMFGDPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASA 119 AAD W + F DP+L LIA+ +N++L +A N A A Q + P L S Sbjct: 61 QAAADIGWRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSV 120 Query: 120 GASRASSGSAGSSSGNGGSTNGASSGGVRNSYTFSLTAAWEPDLWGKVRRDVESSQTSAQ 179 +R+ G + N G + Y+ +L+A++E DL+G++ +++ Sbjct: 121 ARNRS-----GGNVVNPG-----------DYYSAALSASFELDLFGRIHNLSQAALEQYF 164 Query: 180 ASAADLAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKS 239 A +A+LS A++A YL Q++ + T Q + + ++ AG V+ Sbjct: 165 AQEEGQRSAQLSLIAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGL 224 Query: 240 DVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPR---RPLTAVAPPVPQ 296 D+ QAQT +++A+A A +A+ LLVG + LP+ ++ +AP +P Sbjct: 225 DLSQAQTTIETARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAP-LPA 283 Query: 297 GIPSMLLERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGR 356 +PS +L RRPDV E + ANA IG A+AA+FPS++L+ S G S+ S F + Sbjct: 284 QLPSQVLLRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTK 343 Query: 357 VWSLGPQLAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQE 416 WS PQ++ IF GGA A A A+ D +A Y++ + + F++V D LA L Q Sbjct: 344 FWSFVPQISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQR 403 Query: 417 AAVQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLL 476 Q L AA +A L +Y+ G S++ ++ AQ T +A+ + + V L Sbjct: 404 RQAQQALLDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTL 463 Query: 477 AKALGGGWDE 486 K LGGGW+E Sbjct: 464 YKVLGGGWEE 473 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 219/475 (46%), Gaps = 30/475 (6%) Query: 26 LAACSVGPDYVR--PQMDTG-----PAVFKEGQNWKPAQPR-DLAADGKWWEMFGDPQLN 77 ++AC+VGPDY+R P +T P V N + D A WW +F L Sbjct: 20 ISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISADWWNLFHSADLG 79 Query: 78 ALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASR--ASSGSAGSSSGN 135 + + +N +L A+A+ + + +Q+ + P + S A+R S+ GS Sbjct: 80 EAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATRQLPSAFRFGS---- 135 Query: 136 GGSTNGASSGGVRNSYTFSLTAAWEPDLWGKVRRDVESSQTSAQASAADLAAARLSAQAQ 195 AS G+ N +T ++ D++G RR VE+ A A L+ Sbjct: 136 ------ASPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQKYVALATYLTLSGN 189 Query: 196 VAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVIQAQTQLKSAQASA 255 V + AQ + + + Q L V +NQ A G+ + V+ ++ L S+QA+ Sbjct: 190 VVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLLASSQAAL 249 Query: 256 LDNGVTRAQVEHAIALLVGKTPAEFSLPRRPLTAVAPP--VPQGIPSMLLERRPDVAAAE 313 R Q +H +A L G T + L + P +P +PS L+ +RPDV AAE Sbjct: 250 AVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLELPQDLPLTLPSELVRQRPDVLAAE 309 Query: 314 RRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLGPQLAQTIFDGGA 373 ++ A+A +GVA AA FPS +L A+ ++ + + WS+G + IF GG Sbjct: 310 AQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSVGSGVDVPIFQGGT 369 Query: 374 ----RAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQHEALLAARQ 429 R AA D Y +A Y+QTVL+AFQ V D L A+ Q Q E+L AA Q Sbjct: 370 AWHKRRAAQDA----YQQALANYRQTVLSAFQQVADVLTAIEHDAQAVKAQAESLGAAEQ 425 Query: 430 AVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGW 484 + L+ Y+AG VSY++V+ A +++ L L R + L ALGGGW Sbjct: 426 TLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVALGGGW 480 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 142 bits (358), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 136/489 (27%), Positives = 228/489 (46%), Gaps = 31/489 (6%) Query: 5 MTQPHPFKLKPLLAVLLASCALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAAD 64 MT F+ L + A++ C+ D +P ++ PA W P + Sbjct: 1 MTSRFNFRRTHLALAVAVLFAVSGCAHNIDASKPNVEI-PA------TWAEVAPAGIELQ 53 Query: 65 GKWWEMFGDPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASRA 124 WW FG +L+ALI Q + +L +A A S+ ++ P L+ SAG Sbjct: 54 RDWWRGFGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTG 113 Query: 125 SSGSAGSSSGNGGSTNGASSGGVRNSYTFSLTAAWEPDLWGKVRRDVESSQTSAQASAAD 184 + SG S S GV +L+ +E D+WG+V S+ S AS D Sbjct: 114 QVKPGPTGSGWARS----ESTGV------ALSVNYEVDVWGRVAATTRSANASLNASRYD 163 Query: 185 LAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVIQA 244 L RL+ VA Y Q L Q Q+ ++ + ++ + + +Y G + DV + Sbjct: 164 LETVRLTLTTGVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQ 223 Query: 245 QTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPRRPLTAVA-PPVPQGIPSMLL 303 ++ + + +A+ L V Q A+A+L+G+ P + L +A P V G+PS L+ Sbjct: 224 RSTVLAQRATILPLQVQERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLI 283 Query: 304 ERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLG-- 361 RRPDVA+ E ++ A +A + A+AA P+++L+ S G S++ TL +S+G Sbjct: 284 TRRPDVASVEAQLLAGSANVAAARAALLPTISLTGSAGNASAAL---LTLGNPAYSIGIA 340 Query: 362 PQLAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLA-ALRILEQE---A 417 + QT+FDG + + + +Y++TV TA ++V+D L A R EQE Sbjct: 341 ASIVQTLFDGNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQI 400 Query: 418 AVQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLA 477 A++ E A +A+ L +Y+ G +++ AQ T +A+ + R+ + + Sbjct: 401 AIKKE----AERALALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVF 456 Query: 478 KALGGGWDE 486 KALGGGW + Sbjct: 457 KALGGGWSK 465 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.125 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 700,382 Number of extensions: 22215 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 7 Length of query: 513 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 427 Effective length of database: 716,977 Effective search space: 306149179 Effective search space used: 306149179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)