BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1360.p (513 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 159 3e-40 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 149 4e-37 gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 105 5e-24 gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 78 9e-16 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 7/319 (2%) Query: 103 GAVTPTATATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRALQAALTQAEGQLAHDRA 162 G + T A +RARV G ++K ++EG VKAG L IDP +A A +A A Sbjct: 56 GRLESTRIAEIRARVPGVVLKRTFREGSDVKAGATLFLIDPAQFKATYNSANAAVARAEA 115 Query: 163 LLASARLDLKRYQTLLSQDSIASQQVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVT 222 L A L KRY+ L++ ++I+ Q+ D A +KQ E + A + +ARL L + VT Sbjct: 116 TLLQAELKEKRYKPLVATNAISKQEYDDVTATLKQAEADLAASKAARETARLSLDYATVT 175 Query: 223 APISGRLGLRQADVGNNVTTSDTNGLVIITTLQPITAIFSIPEDNIPQVLQQLQSGR--- 279 +PISGR+G G V ++ L + + PI + I Q+ + L G+ Sbjct: 176 SPISGRIGRALVTEGALVGQNEATPLATVQQIDPIYVNMTQSSTEILQLQRALADGKLKS 235 Query: 280 ----KLPAQAWDREQKNKLADGVLLTIDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIR 335 ++ + + G LL D VDA++G + L+A+FPN D L P +V R Sbjct: 236 AGKGQVKVTLVTEDGQEYAQPGKLLFSDLTVDASSGAITLRAEFPNPDSQLLPGMYVRAR 295 Query: 336 LQLKTDEGATVIPTAAIQRGAKGLFVYVVKQDNTVTVRPVKTGTVQDDLSVITDGVKPGE 395 ++ +E A +P AI R G V VV +NTV RPV TG D VI+DG+K G+ Sbjct: 296 VEQAINENAITVPQQAISRTPDGAAVMVVSAENTVVSRPVTTGAASGDSWVISDGLKDGD 355 Query: 396 TVVIDGIDRLREGAKVEAV 414 V+++G+ +++ GA V+ V Sbjct: 356 QVIVEGLQKIKPGATVKPV 374 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 104/323 (32%), Positives = 165/323 (51%), Gaps = 17/323 (5%) Query: 94 NVDVFLNGLGAVTPTATATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRALQAALTQA 153 ++ F NG VT T VR +V + ++ +EGQ VKAG LL +D R+ Q+ + +A Sbjct: 52 SIKAFANGY--VTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKA 109 Query: 154 EGQLAHDRALLASARLDLKRYQTLLSQDSIASQQVDTQMALVKQYEGTVKADEGNVASAR 213 + +LA ++ LA A L LKR + LLS++ ++ VDT V T KA+ S+ Sbjct: 110 QAELAAGQSDLADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSN 169 Query: 214 LQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITTLQPITAIFSIPEDNIPQVLQ 273 + LS R+ A ISGR+G+ G ++ + +V I+ L PI F++PE + + Sbjct: 170 ITLSDNRIAASISGRIGIISVHPG-SLAQPSGDPMVTISQLDPIAVSFTLPERELANITA 228 Query: 274 QLQSGR-----KLPAQAWDREQKNKLADGVLLTIDNQVDATTGTVKLKAQFPNTDYALFP 328 G +LP Q G L+ IDN D +GT+++KAQF N L+P Sbjct: 229 TYPQGNAPVTARLPGQPE--------MTGKLIFIDNAADTQSGTIRMKAQFDNAAQKLWP 280 Query: 329 SQFVNIRLQLKTDEGATVIPTAAIQRGAKGLFVYVVKQDNTVTVRPVKTGTVQDDLSVIT 388 FVN+ L + A ++P A+ G F+YVV+ D TV + V +++ + + Sbjct: 281 GSFVNVSLVSRNVSHAVLVPAQAVVTGPIDKFIYVVQPDATVKEQKVDVVAIEEGQAAVI 340 Query: 389 DGVKPGETVVIDGIDRLREGAKV 411 G+ G VV++G LR G+K+ Sbjct: 341 -GLDAGARVVVEGTQNLRPGSKI 362 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 6/307 (1%) Query: 111 ATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRALQAALTQAEGQLAHDRALLASARLD 170 A VR +V+G + K + EG VKAG L ++D QA A+ LA +A L SA L+ Sbjct: 66 AEVRPQVNGIIKKRLFTEGAQVKAGQPLYQLDDAIYQANYASAKAALARAQATLKSAELN 125 Query: 171 LKRYQTLLSQDSIASQQVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRLG 230 R L+ D+++ Q + A + Q + V A + + S + L + ++T+PI+GR+G Sbjct: 126 ATRTAELVKIDAVSRQDNENAEAALSQSKADVAAAQAALQSNSVTLGYAQITSPITGRIG 185 Query: 231 LRQADVGNNVTTSDTNGLVIITTLQPITAIFSIPEDNIPQVLQQLQSGR-----KLPAQA 285 G VT + L + L P+ + + Q+ ++L +GR LP Q Sbjct: 186 KSSVTQGALVTANQAAALATVQQLNPVYIDLTQSSSELLQLRKELAAGRLTQSGNLPVQI 245 Query: 286 WDREQKNKLADGVLLTIDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTDEGAT 345 + DG L D VD TG+ L+ PN D L P +V + + A Sbjct: 246 VLEDGSRYQHDGKLAFADVTVDPGTGSFALRVTVPNPDNILMPGMYVRALIGNGVRQNAI 305 Query: 346 VIPTAAIQRGAKG-LFVYVVKQDNTVTVRPVKTGTVQDDLSVITDGVKPGETVVIDGIDR 404 ++P I R KG VV +D V +RPV D ++ DG+ G+ V++ G+ + Sbjct: 306 LVPQQGIARDPKGNTSAMVVDKDGKVALRPVSVSRTIGDKWLVEDGLAAGDRVIVAGLQK 365 Query: 405 LREGAKV 411 ++ G V Sbjct: 366 IKPGIPV 372 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 78.2 bits (191), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 126/298 (42%), Gaps = 55/298 (18%) Query: 89 VARVQNVDV--FLNGLGAVTPTATATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRAL 146 VA VQ D+ + G V P V A+V GQL KL+ + G VVK GDLLAEIDP Sbjct: 54 VAEVQRGDIQDLVTATGTVQPLEYVDVGAQVSGQLKKLHIEVGSVVKEGDLLAEIDPTVF 113 Query: 147 QAA-------LTQAEGQLAHDRALLASARLDLKRYQTLLSQDSIASQ------------- 186 +A L + + + LA A L R + L++ D+ ++ Sbjct: 114 RATVDARRAGLRNQQATMKERESALALASLQYTRQKNLMAADATTAETLQIAEATLRAAK 173 Query: 187 -QVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDT 245 Q+D A ++Q + T++ADE N L++ ++ AP++G + A G + + Sbjct: 174 AQIDALQAQIEQTQSTLRADEAN-------LNYAKIYAPMTGTVVSLTARQGQTLNANQN 226 Query: 246 NGLVI-ITTLQPITAIFSIPEDNIPQVLQQLQ--------SGRKLPAQAWDREQKNKLAD 296 ++ I L +T + E I ++ + ++ GR+ W Sbjct: 227 APTILRIADLSTMTVQTQVSEAEIGKLSKNMEVYFTTLGSQGRR-----W---------Y 272 Query: 297 GVLLTIDNQVDATTGTVKLKAQF--PNTDYALFPSQFVNIRLQLKTDEGATVIPTAAI 352 G L I+ T V A F PN + AL P+ + T + ++PT+A+ Sbjct: 273 GALRKIEPTPTVTNNVVLYNALFDVPNNNQALMPNMTTQVFFIAATAKDVLLVPTSAV 330 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 715,699 Number of extensions: 24801 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 4 Length of query: 513 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 427 Effective length of database: 716,977 Effective search space: 306149179 Effective search space used: 306149179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)