BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1358.p (245 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 194 5e-51 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 174 3e-45 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 129 1e-31 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 121 3e-29 gi|134094832|ref|YP_001099907.1| two-component regulatory system... 118 3e-28 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 194 bits (492), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 107/212 (50%), Positives = 135/212 (63%), Gaps = 3/212 (1%) Query: 23 YLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDGLTICRNLR-ATSSVPVIML 81 YL G +TA + M ++ R DL+VLDL LPGEDGL+ICR LR A P+IML Sbjct: 38 YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 97 Query: 82 TARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQA-LPPNMAQPDVAAMRFA 140 TA+GE +DRI+GLEMGADDY+AKPF PREL ARI +VLRR P + F Sbjct: 98 TAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFG 157 Query: 141 GWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRS 200 +TLDL R L D V L+ EF +LKVF H + L+R++L+EL +GRE + FDRS Sbjct: 158 EFTLDLGTRTLKKND-ETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRS 216 Query: 201 VDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 232 +D+QISRLR+ + D TP I+TV GYV Sbjct: 217 LDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 248 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 174 bits (442), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 143/237 (60%), Gaps = 17/237 (7%) Query: 9 VVDDDRDIRTLLAEYLDSNGL---RTLTATNG-NEMRRVLEESRVDLIVLDLTLPGEDGL 64 +++DD+ + ++A YL NG + TA G +++ +++LDL LP DGL Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 65 TICRNLRA----TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 +CR +RA +++P++MLTA+G+P+DR++GLE+GADDY+ KPFEPREL AR+R+VLR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTAR--HLLNQDGVVVALSGAEFRLLKVFLDHPNR 178 R P D +RF +DL AR L +QD V + +F LL + R Sbjct: 121 RQHTTPAT----DGHVLRFGRLEIDLDARMIRLDDQDKPVTSY---QFNLLAAMAERAGR 173 Query: 179 VLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATA 235 VL+R+QL++ +G + FDRS+D+ I RLR + DD + P I TVR GYV A A Sbjct: 174 VLSREQLMDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAKA 230 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 129 bits (324), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 127/231 (54%), Gaps = 15/231 (6%) Query: 7 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDGLTI 66 IL+V+D+ I L+ L G E +++ LI+LD LP + GL + Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 67 CRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQ 123 +RA + +P+IMLTA+ D+I GL+ GADDY+ KPF PREL ARI ++LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 124 ALPPNMAQPDVAAMRFAGWTLD-LTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVLNR 182 P AQ M +LD ++ +N + + + AEF+LLK FL HP+RV +R Sbjct: 128 ---PEHAQ---TLMTAGSISLDPISCSVSMNDEKIDIG--HAEFKLLKFFLAHPDRVFSR 179 Query: 183 DQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLA 233 QLL+ G +R+VD+ + RLR+ L + +IKTVR+ GY+L+ Sbjct: 180 SQLLDKVWGDHVVIEERTVDVHVLRLRKALKEAEH---LIKTVRSVGYMLS 227 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 125/232 (53%), Gaps = 13/232 (5%) Query: 4 NAHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDG 63 A ILVV+D+ I LL L+ + A + +++ LI+LD LP + G Sbjct: 5 KATILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSG 64 Query: 64 LTI---CRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 L + R R +P+IMLTA+ D++ GLE GADDY+ KPF PREL AR+ +L+ Sbjct: 65 LQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLK 124 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVL 180 P AQ M+ LD +R +++ + + AEF+LLK L HPN V Sbjct: 125 HKV---PEHAQ---ETMKAGPIRLDPASR-MVSVGTKNITIGHAEFKLLKYLLAHPNHVY 177 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 232 +RDQL++ GR +R+VD+ + RLR+ LG+ +IKTVR GY+L Sbjct: 178 SRDQLIDRVWGRHIAIDERTVDVNVLRLRKVLGEGR---YLIKTVRGVGYML 226 >gi|134094832|ref|YP_001099907.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 11/228 (4%) Query: 8 LVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEES---RVDLIVLDLTLPGEDGL 64 L+V+D+ IR + L+ G + A M+R L ++ + +LIVLDL LP DG+ Sbjct: 9 LLVEDEPQIRRFVRAALEEEGWQIFEAET---MKRGLIDAGTRKPNLIVLDLGLPDGDGV 65 Query: 65 TICRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQA 124 ++R S+VP+I+L+AR D+I L+ GADDYL+KPF EL AR+RS +RR Sbjct: 66 DFIHDVRKWSTVPIIVLSARTNESDKIKALDAGADDYLSKPFGVGELLARVRSTVRRQHR 125 Query: 125 LPPNMAQPDVAAMRFAGWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVLNRDQ 184 + + A++F LDL A HL+ + +V L+ E+RLL V + RV+ Q Sbjct: 126 QGSDAQE----AIQFGDVRLDLKA-HLVTKGNQMVHLTPTEYRLLAVLATNAGRVVTNPQ 180 Query: 185 LLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 232 LL G + I + LRQKL DD P + T GY L Sbjct: 181 LLREVWGPSHSESSHYLRIYMGHLRQKLEDDPAQPRYLLTETAVGYRL 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 456,269 Number of extensions: 18458 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 25 Length of query: 245 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 166 Effective length of database: 740,042 Effective search space: 122846972 Effective search space used: 122846972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)