BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1357.p (459 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 132 3e-32 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 109 3e-25 gi|134096138|ref|YP_001101213.1| two component sensor histidine ... 95 6e-21 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 94 1e-20 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 89 4e-19 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 13/269 (4%) Query: 192 LVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTH 251 +++ + +P+ +L A + + APL E+GPTEIR+A H+FN M + R R Sbjct: 178 MISGLINQPLARLTAATRAIANGQWPAPLPESGPTEIREANHSFNQMVDDLNRVESDRAV 237 Query: 252 MLAAITHDLQTPLTRMRLRLEKVA-DSQLQQKLIDDLGVMHGMVREGLDLARSMDSSEKI 310 +LA I+HDL+TPL RM+L +E ++ + DL M ++ + LD A+ +DSS Sbjct: 238 VLAGISHDLRTPLARMQLEVEMAGLPDDARKGMQSDLEQMDAIIGQFLDYAKPVDSSH-F 296 Query: 311 QALDIDSLLDSVCADAADSGQDVSLQG--STRAFVMAQPGALRRCLTNLIDNACKYGKVA 368 +++D+ +LL +AA DV + + V+ ++R + NL++NA +YGK Sbjct: 297 KSVDLTALLSEAAHEAA-RLPDVQVHPFMEDKVTVLGNAIDIKRVVNNLVENARRYGKAT 355 Query: 369 -------RVTIALEQQKIAIRIRDQGPGIPEAELEAVFEPFYRLEASRSRDTGGTGLGLT 421 + +E K+ + I D G G+P E+ + PF R++++R + G GLGL Sbjct: 356 DAHHVDIDICCRIEGDKVMLEIADHGAGVPAEEIARLLRPFTRMDSARGQ-ANGAGLGLA 414 Query: 422 IALNIAENHHGQLRLRNLSEGGLEVLLEL 450 I I + H G+L L N GGL V + L Sbjct: 415 IVDRIVKRHGGKLHLFNRDGGGLTVQIVL 443 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 152/310 (49%), Gaps = 36/310 (11%) Query: 174 FGLQYILLFLVLIAMLA---WLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQ 230 L+ +L FLV+I +LA W+V + P+ LA+A R S+ E P E++ Sbjct: 103 MALRSLLPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSSNALEPLPGERYPPELQP 162 Query: 231 AAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVA----DSQLQ---QKL 283 A N + R+ + + + +A H+L+TPLT ++L+L+ V D Q +KL Sbjct: 163 MLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKL 222 Query: 284 IDDLGVMHGMVREGLDLAR-----SMDSSEKIQALDIDSLLDSVCAD----AADSGQDVS 334 + L +V++ L LAR + SS+KI D+ L V +D A G D+ Sbjct: 223 HERLNRATHLVQQLLTLARHEYRIADRSSQKI---DLRQLTARVVSDYAPQAEHKGVDLG 279 Query: 335 L-----QGSTRAFVMAQPGALRRCLTNLIDNACKY----GKV-ARVTIALEQQKIAIRIR 384 + QGS A + +LR L NL+DNA +Y G+V V + + +R++ Sbjct: 280 IAINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVK 339 Query: 385 DQGPGIPEAELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNL-SEGG 443 D GPGIP + E VF+ FYR + + G+GLGL IA IA H + L S+GG Sbjct: 340 DNGPGIPVQDQERVFDRFYRRDGT---GESGSGLGLFIAKTIATQHEATIELSTADSKGG 396 Query: 444 LEVLLELPTM 453 L V + P + Sbjct: 397 LIVTVRFPLL 406 >gi|134096138|ref|YP_001101213.1| two component sensor histidine kinase protein [Herminiimonas arsenicoxydans] Length = 405 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 20/243 (8%) Query: 220 LAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLE---KVAD 276 +A G E+ + A +FN ARI + + +LA +H+L++PL R+R+ +E A Sbjct: 171 IAVEGQDEVGRLASSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAIELMGPAAQ 230 Query: 277 SQLQQKLIDDLGVMHGMVREGLDLAR---SMDSSEKIQALDIDSLLDSVCA--DAADSGQ 331 +++ +L ++G + ++ E L +R + D+++ + +D+ +LL CA A Q Sbjct: 231 PEIRSELKRNIGELDQLIDEILLASRLDATADATQTFETIDLTALLAEECARIGAQLDAQ 290 Query: 332 DVSLQGSTRAFVMAQPGALRRCLTNLIDNACKYGKVARVTIALEQ---QKIAIRIRDQGP 388 + L G R NL++NA +YG +T+ L + +++ D GP Sbjct: 291 AIELSGDARLLRRLV--------RNLLENARRYGNDTPITVTLAAAPGNTVLLQVCDGGP 342 Query: 389 GIPEAELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLL 448 G+P AE E +FEPFYR+ + R+ GG GLGL++ IA H G + E G + Sbjct: 343 GVPVAERENIFEPFYRVAGASERE-GGVGLGLSLVRQIARRHGGDVVYVARDEPGSCFRV 401 Query: 449 ELP 451 LP Sbjct: 402 TLP 404 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 24/299 (8%) Query: 176 LQYILLFLVLIAML-AWLVARMATRPIRQLAQAASRLGSDIDHAPLAETG-PTEIRQAAH 233 L + L + LIA++ AW + RPIR++++ + S L+ T P E+ + A Sbjct: 178 LWWATLIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDVPIELAELAV 237 Query: 234 AFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVADSQLQQ---------KLI 284 +FN M RI + A I H+L+TP+T + + +VA SQ++ + Sbjct: 238 SFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQ-TQVALSQVRSADEYREVLYSNL 296 Query: 285 DDLGVMHGMVREGLDLARSMDSSEKIQALDID------SLLDSVCADAADSGQDVSLQGS 338 ++ + M+ + L LA++ + ++ + D L D A D+ ++L G Sbjct: 297 EEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSGQ 356 Query: 339 TRAFVMAQPGALRRCLTNLIDNACKY---GKVARVTIALEQQKIAIRIRDQGPGIPEAEL 395 + ++A + R L+NL+ NA +Y G V + + ++ I + + G I E +L Sbjct: 357 VKP-IIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAEDDL 415 Query: 396 EAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLLELPTMT 454 +F+ F+R++ SR R +G GLGL I +I E H G+++ + G ++ L+ELP+++ Sbjct: 416 PKLFDRFFRVDPSRQRKSGA-GLGLAIVKSIIEAHDGKVQATS-RNGLIKFLIELPSIS 472 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 19/224 (8%) Query: 249 RTHMLAAITHDLQTPLTRM-----RLRLEK----VADSQLQQKLIDDLGVMHGMVREGLD 299 R +L+A++HDL+TPLT + L + K + +L Q L D+ M +V LD Sbjct: 685 RNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRMSNLVSNLLD 744 Query: 300 LARSMDSSEK--IQALDIDSLLDSV--CADAADSGQDVSLQ-GSTRAFVMAQPGALRRCL 354 +AR K +Q L + ++ S + +A + ++ + V + R L Sbjct: 745 MARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVRFDAVLIERVL 804 Query: 355 TNLIDNACKYGKV-ARVTIALE--QQKIAIRIRDQGPGIPEAELEAVFEPFYRLEASRSR 411 NLI+NA KY +R+ IA E + + + + D GPG+P + EA+F+ F R E R Sbjct: 805 CNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAIFDKFTRGE--RES 862 Query: 412 DTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLLELPTMTP 455 T G GLGL I I E H G +R + +GG + LP TP Sbjct: 863 ATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLPLGTP 906 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 755,519 Number of extensions: 27772 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 19 Length of query: 459 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 374 Effective length of database: 720,272 Effective search space: 269381728 Effective search space used: 269381728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)