BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1356.p
         (342 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095361|ref|YP_001100436.1| tryptophanyl-tRNA synthetase [H...   160   9e-41

>gi|134095361|ref|YP_001100436.1| tryptophanyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  160 bits (405), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 190/405 (46%), Gaps = 89/405 (21%)

Query: 14  VLTGDRPTGPLHLGHYIGSLKSRVALQETARQFLLLADTQAMTDNVGRHQKVTDNVLEVA 73
           V++G RPTG +HLGHY G+LK+ + LQ        +AD  A+T +      +  +  E+ 
Sbjct: 6   VVSGMRPTGAMHLGHYHGALKNWIKLQSEVPCLFFVADWHALTTHYDDPSIIESSTWEML 65

Query: 74  LDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPTIKEEIRLRGFERDIP 133
           +D+LA GIDP KS++FIQSQV E  EL ++L  +  +  LER PT K++ + +  ERD+ 
Sbjct: 66  IDWLAAGIDPAKSSLFIQSQVIEHAELHLLLSMITPLGWLERVPTYKDQ-QEKLSERDLA 124

Query: 134 A-GFLTYPVSQAADITAFKGQLVPVGSDQLPMIEQTNELVRKFNATVDREVLVECKEVLS 192
             GFL YP+ QAAD+  ++   VPVG+DQ+P IE   E+ R+FN    +E   E ++V +
Sbjct: 125 TYGFLGYPLLQAADVLIYRATQVPVGADQIPHIEMMREIARRFNHLYGKEKGFE-EKVAA 183

Query: 193 ETGRLPGIDGKAKMSKSL-------GNSIALGAT-------------------------- 219
              +L G   +AK  K L       GN+ ALG                            
Sbjct: 184 TLQKLSG--KQAKQYKELRTTYQEQGNAEALGWAKTLLDSVQSISETDRERLFGYLAGTR 241

Query: 220 -----------------PAEIKQAVHRMYTDPNHLRVD-------------DPGQVEGNV 249
                            P    Q + + Y +   LR D             DP +V    
Sbjct: 242 KQILLEPQARLTESSRMPGLDGQKMSKSYGNSISLREDKESLTKKIRTMPTDPARVRRT- 300

Query: 250 VFTFLDAFDPDREAVAELKAHY-------------TRGGLGDSVVKRR-LEGILQELLEP 295
                D  DP++  V +L   Y             T  G+G    K+  +EG+L+E  EP
Sbjct: 301 -----DPGDPEKCPVWQLHLVYSDAPTREWVVKGCTSAGIGCLECKQPVIEGVLKE-QEP 354

Query: 296 IRTRREEFAKDRGEVLAILKRGTERASAVAAQTMAEVNAALGLNY 340
           +R R +++  D   V AI+  G ++A A+A +TM EV  A+GL Y
Sbjct: 355 MRERAQKYIDDPSLVRAIVADGRDKARALAQETMREVRDAMGLGY 399


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 612,799
Number of extensions: 24530
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 260
Effective length of database: 730,157
Effective search space: 189840820
Effective search space used: 189840820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)