BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1355.p
         (205 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095707|ref|YP_001100782.1| hypothetical protein HEAR2537 [...    99   2e-22

>gi|134095707|ref|YP_001100782.1| hypothetical protein HEAR2537
           [Herminiimonas arsenicoxydans]
          Length = 142

 Score = 98.6 bits (244), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 84/135 (62%), Gaps = 6/135 (4%)

Query: 35  MLALGGCVSVPTGPSVMAMPGKGKSYEQFRAEQQQCQQYAQEAIGGQAAQTQNNAANSAA 94
           ++ L GC S PTGPS+  MPG GKS+EQF  +   C+QYA    GG      N A  SAA
Sbjct: 14  LVLLAGCASAPTGPSIAVMPGAGKSFEQFNVDDIVCRQYAANQTGGAVQSANNKAVGSAA 73

Query: 95  VGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQ 154
           +GT    V GA  GAA G +  GA  GAG GLLVGSAAG+NA+  G Y  Q+ YD++Y Q
Sbjct: 74  IGT----VIGAAAGAAIGGSHRGAGTGAGAGLLVGSAAGANASQYGTYGAQRSYDISYAQ 129

Query: 155 CMVSKGNQVQQPVVE 169
           CM +KGN V  P++ 
Sbjct: 130 CMYAKGNNV--PIIR 142


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 141,913
Number of extensions: 3190
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 128
Effective length of database: 746,632
Effective search space: 95568896
Effective search space used: 95568896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)