BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1351.p
         (319 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093879|ref|YP_001098954.1| CobD/CbiB family protein [Hermi...   425   e-120
gi|134094202|ref|YP_001099277.1| putative cobalamin biosynthesis...   112   2e-26

>gi|134093879|ref|YP_001098954.1| CobD/CbiB family protein
           [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  425 bits (1093), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/319 (70%), Positives = 261/319 (81%), Gaps = 1/319 (0%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWVVMVGALTV 60
           MTF SILFALLIEQLKPLRADNPVYA  ++ A  +E  FNAGQV HGR+ W +M+ A  V
Sbjct: 1   MTFFSILFALLIEQLKPLRADNPVYAGARALAEKLEKSFNAGQVQHGRIAWFLMIAAFIV 60

Query: 61  PVALVYWVLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQMALNSGDEMTARTLLAEW 120
           PVAL+YW+ L +  +AA   NV VVY+TLGFRHYSH+FTSIQ+ALN+GDE TAR+LLAEW
Sbjct: 61  PVALLYWISLKIGPLAALVVNVAVVYVTLGFRHYSHFFTSIQLALNNGDEATARSLLAEW 120

Query: 121 TKLDTAGMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEYLARAWNE 180
           TK DTA MDVSE++RIA E+AL+TTHR+VFGVFFW L P+GP  A+MYRVAEYLARAWNE
Sbjct: 121 TKRDTADMDVSEVARIAVEKALVTTHRNVFGVFFWILTPLGPVGAIMYRVAEYLARAWNE 180

Query: 181 PDHMKFEAFGRFAAQAFYWIDWIPARLTASAFAVVGNFEDAIYAWRNFASRWDDEAVGII 240
           P   + E FGRFAAQAFYWIDWIP RLTA+AFAVVGNFEDAIYAWRNFA RW DEAVGII
Sbjct: 181 PKAAEREEFGRFAAQAFYWIDWIPVRLTAAAFAVVGNFEDAIYAWRNFAGRWQDEAVGII 240

Query: 241 LAAGGGAMGVRFGTEKQAAAGIILPADAATVDSMPEESDGLPGDTPSPRTLQSTVGLVWR 300
           L+AGGGAMG+R G   + AA +I P DA TVDS+  E++   G+  S R LQSTVGLVWR
Sbjct: 241 LSAGGGAMGIRLGASVENAADVI-PVDAGTVDSITLETEAPVGEEASVRALQSTVGLVWR 299

Query: 301 ALLLWMFLLLLLSVAVWMG 319
           ALLLWM L+LLLS+A W+G
Sbjct: 300 ALLLWMLLVLLLSIAKWLG 318


>gi|134094202|ref|YP_001099277.1| putative cobalamin biosynthesis
           protein [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 30  SFAATIEGWFNAG--QVHHGRLGWVVMVGALTVPVALVYWVLL----HVSLVAAFAWNVL 83
           + A  IE   N G  ++  G + W+++V    +P+ LV W+L        L+ AF  + L
Sbjct: 25  NLAIRIEKKLNTGGSRIVRGAVAWMLIV----LPLVLVAWLLTFWLAQFDLLLAFGVHAL 80

Query: 84  VVYMTLGFRHYSHYFTSIQMALNSGDEMTARTLLAEWTKLDTAGMDVSEISRIASERALI 143
           ++Y  LG R    +   I  AL  GD   AR L A     DT     +++++   E  L 
Sbjct: 81  LLYFGLGLRSLRDHTLPIAHALMDGDLSQARLLTARIVSRDTTQAQEADLAKAGVESLLE 140

Query: 144 TTHRHVFGVFFWFLMPVGPALAVMYRVAEYLARAWNEPDHMKFEAFGRFAAQAFYWIDWI 203
             +  VFG  FWF++  GP + V++R A  L   W      +F  FGR AA+    +++I
Sbjct: 141 NGNDAVFGTLFWFVLAGGPGV-VLFRFANTLDAMWGYRTQ-RFNEFGRVAARIDDVLNFI 198

Query: 204 PARLTASAFAVVGNFEDAIYAWRNFASRWDDEAVGIILAAGGGAMGVRFG 253
           PARLTA ++AV+GN + A   WR  A  W     G +++AG GA+G+  G
Sbjct: 199 PARLTALSYAVLGNAKQAWQCWRVQAPAWSSPNAGPVMSAGAGALGISLG 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 565,513
Number of extensions: 20605
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 237
Effective length of database: 730,157
Effective search space: 173047209
Effective search space used: 173047209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)