BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1350.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093878|ref|YP_001098953.1| putative pyrophosphatase; putat...   273   6e-75

>gi|134093878|ref|YP_001098953.1| putative pyrophosphatase; putative
           MutT/nudix family protein [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  273 bits (697), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/220 (62%), Positives = 169/220 (76%), Gaps = 4/220 (1%)

Query: 4   FDPVNLPVDTVAGESALEAARLNADWLRQRFADPPRWEPEHSGDQMARMAETRGRFRLAS 63
           FDP  LPVD++ GE A+   +L A+ LR RF +PP W PE   +++ R  +       A+
Sbjct: 6   FDPELLPVDSLGGEDAITLEQLKAEALRARFLNPPVWSPEIRVERLVR--QLNRPLMDAA 63

Query: 64  VLIPIVLREQGMTVLFTRRTADLKDHAGQISFPGGRREDYDGSAIETALRETEEEIGLAR 123
           VL+PIV+R+ G T+L T+RTA L DHAGQISFPGGR E  DGS IETALRETEEE+GLAR
Sbjct: 64  VLLPIVMRDPGPTLLLTQRTAHLHDHAGQISFPGGRVEPGDGSPIETALRETEEEVGLAR 123

Query: 124 QHIEVIGSLPDYFTGTGYRVTPVAGLIQPPFEAVGDPREVAEIFEVPLAFLMDGVNHQRR 183
           +HI+VIG+LPDY TGTG+RVTPV G++QPPF+   D  EVAEIFEVPLAFLM+G +HQRR
Sbjct: 124 RHIDVIGALPDYHTGTGFRVTPVVGIVQPPFDVHPDTFEVAEIFEVPLAFLMNGAHHQRR 183

Query: 184 SVELPAPVGRRSFYTMPYERYFIWGATAGMLRNLFHFLRS 223
           + +     G R+FY MPYER+FIWGATAGMLRNLFHFLR+
Sbjct: 184 TAQFET--GSRTFYVMPYERHFIWGATAGMLRNLFHFLRA 221


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 464,593
Number of extensions: 20005
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)