BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1348.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093876|ref|YP_001098951.1| tRNA (guanine-N(1)-)-methyltran...   401   e-113

>gi|134093876|ref|YP_001098951.1| tRNA
           (guanine-N(1)-)-methyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 248

 Score =  401 bits (1030), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/248 (75%), Positives = 214/248 (86%)

Query: 1   MQFDVVTLFPEMFAALTQSGITRRALEQQRWGLQLWNPREFTTDNHRTVDDRPYGGGPGM 60
           MQFDVVTLFPEMF A+TQSGITRRA EQ++  L LWNPR+FT+D HRTVDDRPYGGGPGM
Sbjct: 1   MQFDVVTLFPEMFTAITQSGITRRAFEQKKCELALWNPRDFTSDRHRTVDDRPYGGGPGM 60

Query: 61  VMLAKPLQAAIEAAQQRQQTLGLAKPRVIYLSPQGAPLTHERVVRLSQDSGAVLLCGRYE 120
           VM+ KPL+AA+  A++RQ    L  PRVIYLSPQG  LTHERV++L+ + G VLLCGRYE
Sbjct: 61  VMMVKPLEAAVLEAKKRQIATDLPTPRVIYLSPQGKALTHERVMQLTAEPGLVLLCGRYE 120

Query: 121 AIDQRLLDKCVDEEISIGDFVLSGGELPAMALMDAVIRLLPGALNDSASAVEDSFVNGLL 180
           A+DQR LD CVDEEIS+GDFVLSGGELPAMALMDAVIR LPG L+D ASAVEDSFVNGLL
Sbjct: 121 AVDQRFLDVCVDEEISLGDFVLSGGELPAMALMDAVIRQLPGVLHDDASAVEDSFVNGLL 180

Query: 181 DSPHYTRPEVYEGEPVPSILLGGHHAEIQKWRRQRALEATQAKRPDLIIRAREQGLLSKA 240
           D PHYTRPEVYEG  VP++L+GGHH EI+KWRR+RALEAT  KRPD+I++AR  GLL++A
Sbjct: 181 DCPHYTRPEVYEGVAVPAVLMGGHHVEIEKWRRERALEATAKKRPDMIVKARAAGLLTRA 240

Query: 241 DEKFLGSL 248
           DEKFL SL
Sbjct: 241 DEKFLSSL 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 491,647
Number of extensions: 19633
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)