BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1345.p
         (140 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093873|ref|YP_001098948.1| hypothetical protein HEAR0622 [...   128   1e-31
gi|134095987|ref|YP_001101062.1| putative transmembrane protein ...   117   3e-28

>gi|134093873|ref|YP_001098948.1| hypothetical protein HEAR0622
           [Herminiimonas arsenicoxydans]
          Length = 197

 Score =  128 bits (322), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 91/135 (67%), Gaps = 1/135 (0%)

Query: 7   HKNKTLSTFLAAVGGSIGLHRFYLYGNRDRFGWLHILAIP-LSLGLMAAQPSTPKLFTGL 65
           HKNKT ST LA + GS+G HRFYLYG +D + W+ +L    L + +MA  P T  +   +
Sbjct: 63  HKNKTFSTLLATLFGSLGAHRFYLYGKKDVWAWVAVLIFAALFVVVMAQLPQTLLITFLV 122

Query: 66  PFVLSALIACLEALVIGLTPDDKWDARHNAGSGKHSESHWILAVILVLTVGLGAMGVIAL 125
            F++S     + ALVIGLTPD+KWD +HNA SG  S+S W + ++++LT  LG+  +IA 
Sbjct: 123 LFLISFFAGLIAALVIGLTPDEKWDKQHNAASGYASDSGWAVILLVILTFALGSTALIAA 182

Query: 126 LARSFDLLFTGGAFG 140
           +AR+FDL  TGGAFG
Sbjct: 183 IARAFDLYLTGGAFG 197


>gi|134095987|ref|YP_001101062.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 141

 Score =  117 bits (292), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 2/136 (1%)

Query: 7   HKNKTLSTFLAAVGGSIGLHRFYLYGNRDRFGWLHILAIPLSLG--LMAAQPSTPKLFTG 64
           HKNKTL+T LA V G  G+HRFYLYG RD + W ++ A  L +   ++A  P +  +   
Sbjct: 6   HKNKTLATLLAVVLGGPGIHRFYLYGPRDFWAWNYVAAFLLFVCALVLAQGPHSLGITLL 65

Query: 65  LPFVLSALIACLEALVIGLTPDDKWDARHNAGSGKHSESHWILAVILVLTVGLGAMGVIA 124
             F +S     +EA+VIGLTPD KWDARHNA S + S S W L ++LVLT   G    I 
Sbjct: 66  TLFPISIFAGWIEAMVIGLTPDKKWDARHNANSARASASGWPLVLLLVLTFACGFTTFIV 125

Query: 125 LLARSFDLLFTGGAFG 140
            +AR+ DL  TGGAFG
Sbjct: 126 CIARATDLFLTGGAFG 141


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 310,170
Number of extensions: 13226
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 67
Effective length of database: 759,812
Effective search space: 50907404
Effective search space used: 50907404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)