BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1344.p (588 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 961 0.0 gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 446 e-126 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 101 9e-23 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/590 (78%), Positives = 520/590 (88%), Gaps = 2/590 (0%) Query: 1 VKDMLFVMNELAGLAAVNALPGCEDATPETAEAILEEKAKFCSEVIAPLNHSADKEPSSW 60 +KDMLFVMNELA LAAVN LPGCEDATPET EA+LEE A+FCSEVIAPLN + D++PS+W Sbjct: 7 LKDMLFVMNELADLAAVNTLPGCEDATPETVEAVLEENARFCSEVIAPLNQTGDRQPSAW 66 Query: 61 ADGKVTTSPGFKQAFRQFGEAGWQGVQHPVEFGGQGLPKLLATPCIEMLNSANLSFALCP 120 DG VTT+PGFK+AF+ +G AGWQGVQHPV FGGQGLPK++ATPC+EMLN+ANLSFALCP Sbjct: 67 KDGAVTTTPGFKEAFKAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAANLSFALCP 126 Query: 121 LLTDGTIEALMTAGSQAQKETFIANFISGKWTGTMNLTEPQAGSDLALVRTRAVPEGDGT 180 LLTDG IEALMTAGS+AQKETF+ NFI+GKWTGTMNLTEPQAGSDLA+VR+RAVP+GDGT Sbjct: 127 LLTDGAIEALMTAGSEAQKETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSRAVPQGDGT 186 Query: 181 YKIFGTKIFITYGEHDMAENIVHLVLARTPNAPEGVKGISLFIVPKFLINADGSLGARND 240 YKI GTKIFITYGEHDMAENIVHLVLARTP+APEGVKGISLF+VPKFL+NADGSLGARND Sbjct: 187 YKISGTKIFITYGEHDMAENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADGSLGARND 246 Query: 241 VHCVSIEHKLGIKASPTAVLQFGDHGGAIGTLVGEENRGLEYMFIMMNAARFAVGIQGLS 300 +CVSIEHKLGI+ASPTAVLQFGDHGGAIGTLVGEENRGLE MFIMMNAARFAVGIQG++ Sbjct: 247 AYCVSIEHKLGIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFAVGIQGIA 306 Query: 301 VSERSYQKAVAYARDRIQSRDLAGSPGPVAIIHQPDVRRMLMSMRAQIEAARALAYVAAA 360 V+ER+YQKAV+YA+DR+QS+DL GS V+IIHQPDVRRMLMSMRAQIEAARALAYV AA Sbjct: 307 VAERAYQKAVSYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAA 366 Query: 361 TSDAAHFSNDEATRKSNQAFYEFLVPIVKGWITEMSVDVTSTGVQVHGGMGFIEETGAAQ 420 D AH D R S+QAFYEFLVP++KGW TEMS+DV STG+Q+HGGMGFIEETGAAQ Sbjct: 367 AFDIAHHHADAEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFIEETGAAQ 426 Query: 421 YYRDARILPIYEGTTAIQANDLVGRKTARDGGAVAKGILAQVRQT--VSELQGDAQLQPI 478 YYRDARIL IYEGTTAIQANDLVGRKTARDGGAVA+ I+A+VR+T A LQ I Sbjct: 427 YYRDARILTIYEGTTAIQANDLVGRKTARDGGAVARDIIARVRKTEAELAAAASADLQAI 486 Query: 479 AARLAEAADALEQVVEYVVGNLKSDIKAVFAGSVPYLKMAGVVLGGWQMARAAAIAAAKL 538 LA A+ +L++VV YVV N+++DIK VFAGSVPYLK+AG+VLGGWQMARAA IA KL Sbjct: 487 GRHLAAASTSLDEVVAYVVANIQADIKGVFAGSVPYLKLAGIVLGGWQMARAALIAQQKL 546 Query: 539 KAGEGDDKFYAAKLATARFYADQILPQALAHRTAIVEGGQAVLALAEDQF 588 A EGD KFY AK+ATARF+AD L QA A+R+AIV G VLAL EDQF Sbjct: 547 NAQEGDAKFYQAKIATARFFADYYLSQAGAYRSAIVAGSSGVLALDEDQF 596 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust. Identities = 248/575 (43%), Positives = 345/575 (60%), Gaps = 19/575 (3%) Query: 1 VKDMLFVMNELAGLAAVNALPGCE---DATPETAEAILEEKAKFCSEVIAPLNHSADKEP 57 ++DM FV++EL L A + L + D + +LEE KF SEV+ PLNHS D+E Sbjct: 8 LRDMQFVLHEL--LHAEDELKQMQKYVDIDADIINQVLEEGGKFTSEVLFPLNHSGDREG 65 Query: 58 SSW--ADGKVTTSPGFKQAFRQFGEAGWQGVQHPVEFGGQGLPKLLATPCIEMLNSANLS 115 + +VT GFK A+ Q+ AGW + E+GGQGLP +L EMLNS+N + Sbjct: 66 CTLDPVTHEVTPPAGFKAAYAQYVAAGWPSLSCDPEYGGQGLPMVLQNSFFEMLNSSNQA 125 Query: 116 FALCPLLTDGTIEALMTAGSQAQKETFIANFISGKWTGTMNLTEPQAGSDLALVRTRAVP 175 + + P L+ G E L G+ QK ++ +SG+WTGTM LTE G+DL L+R++A P Sbjct: 126 WTMYPGLSHGAYECLHEHGTAEQKALYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKAEP 185 Query: 176 EGDGTYKIFGTKIFITYGEHDMAENIVHLVLARTPNAPEGVKGISLFIVPKFLINADGSL 235 + DG+YKI G+KIFI+ GEHDM +NI+HLVLAR P+AP+G GISLFIVPKFL NADG+L Sbjct: 186 QADGSYKITGSKIFISAGEHDMVQNILHLVLARLPDAPQGTHGISLFIVPKFLPNADGTL 245 Query: 236 GARNDVHCVSIEHKLGIKASPTAVLQFGDHGGAIGTLVGEENRGLEYMFIMMNAARFAVG 295 GARN + C ++E K+GI + T + GA G ++G+ N+GL MF+MMNAAR VG Sbjct: 246 GARNPIFCGALEEKMGIHGNATCQMNI---DGATGWMIGQPNKGLNAMFVMMNAARLGVG 302 Query: 296 IQGLSVSERSYQKAVAYARDRIQSRDLAG-----SPGPVAIIHQPDVRRMLMSMRAQIEA 350 +Q L ++E +YQ A+ YA+DR+Q R L G P I+H PDVRRML++ +A E Sbjct: 303 MQSLGLTEVAYQNALLYAKDRLQMRSLTGVKAADKPADPIIVH-PDVRRMLLTAKAYAEG 361 Query: 351 ARALAYVAAATSDAAHFSNDEATRKSNQAFYEFLVPIVKGWITEMSVDVTSTGVQVHGGM 410 RA + A D DEA RK L PI+K ++T+ TS +QV+GG Sbjct: 362 GRAFSSYVALQIDRELNHPDEAVRKDAADEVALLTPIIKAFLTDNGWIATSEAMQVYGGH 421 Query: 411 GFIEETGAAQYYRDARILPIYEGTTAIQANDLVGRKTARDGGAVAKGILAQVRQTVSELQ 470 G+I E G QY RDARI IYEGT IQ+ DL+GRK D GA + ++R + E Sbjct: 422 GYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGEKIRVFIEENG 481 Query: 471 GDAQLQPIAARLAEAADALEQVVEYVVGNLKSDIKAVFAGSVPYLKMAGVVLGGWQMARA 530 D + LA+ A+ + ++ + + A +VPYL++AG ++ + A+ Sbjct: 482 TDEAMSEFITPLADLAEKVTKLTMEIGMKAFQNPDEAGAAAVPYLRVAGHLVYAYFFAQM 541 Query: 531 AAIAAAKLKAGEGDDKFYAAKLATARFYADQILPQ 565 A +A AK +G D FY AKLAT+RFY ++LP+ Sbjct: 542 ARLALAK---QDGGDNFYKAKLATSRFYFARLLPE 573 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 101 bits (252), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 100/337 (29%), Positives = 156/337 (46%), Gaps = 46/337 (13%) Query: 155 MNLTEPQAGSDLALVRT--RAVPEGDGT---YKIFGTKIFITYGEHDMAENIVHLVLART 209 M +TE Q GSD+ T RAV G G Y + G K F + D HLVLART Sbjct: 180 MGMTEKQGGSDVRSNTTVARAV-HGSGRGADYALTGHKWFFSAPMCD-----AHLVLART 233 Query: 210 PNAPEGVKGISLFIVPKFLINADGSLGARNDVHCVSIEHKLGIKASPTAVLQFGDHGGAI 269 N G+S F VP++ DGS RN V ++ KLG +++ ++ ++F D A Sbjct: 234 EN------GLSCFFVPRW--RPDGS---RNAVLIQQLKDKLGNRSNSSSEVEFQD---AY 279 Query: 270 GTLVGEENRGLEYMFIMMNAARFAVGIQGLSVSERSYQKAVAYARDRIQSRDLAGSPGPV 329 G +VGEE RG+ + M N R I + + +A+ +AR R G P Sbjct: 280 GVMVGEEGRGIPTIIEMANHTRLDCVIGSAGLMRNALVQAIHHAR----HRSAFGHP--- 332 Query: 330 AIIHQPDVRRMLMSMRAQIEAARALAYVAAATSDAAHFSNDEATRKSNQAFYEFLVPIVK 389 + QP +R +L + + EAA L A +DA+ + D+ + A+ L P K Sbjct: 333 -LAEQPLMRNVLSDLALESEAATLLMLRLARAADASRDAPDDLLER---AWRRILTPAAK 388 Query: 390 GWITEMSVDVTSTGVQVHGGMGFIEETGAAQYYRDARILPIYEGTTAIQANDLVGRKTAR 449 W+ + ++ + ++V GG G+IE A+ +R+A + I+EG+ + D++ R R Sbjct: 389 FWVCKRVLEFSGECMEVWGGNGYIENAPMARMFREAPVNSIWEGSGNVMCLDVL-RAIER 447 Query: 450 DGGAVA---------KGILAQVRQTVSELQGDAQLQP 477 + A G A +R ++ L D L P Sbjct: 448 EAEGFALLLQNLQDSAGTHAGLRALIASLHNDLALPP 484 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,081,899 Number of extensions: 44139 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 3 Length of query: 588 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 501 Effective length of database: 713,682 Effective search space: 357554682 Effective search space used: 357554682 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)