BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1343.p
         (312 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093871|ref|YP_001098946.1| electron transfer flavoprotein ...   485   e-138

>gi|134093871|ref|YP_001098946.1| electron transfer flavoprotein
           subunit alpha [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  485 bits (1249), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/312 (83%), Positives = 278/312 (89%), Gaps = 3/312 (0%)

Query: 1   MTALAILVVAEHDNVSLKGSTLNTITAAVQAGGDVHVLVAGSNAKAAADAAAQVAGVAKV 60
           MTAL   V+AEHDN SLKGSTL+TITAA+Q GG+VHVLVAG  A AA   AA++AGVAKV
Sbjct: 1   MTAL---VIAEHDNASLKGSTLHTITAALQCGGEVHVLVAGHQAAAAVQEAAKIAGVAKV 57

Query: 61  LLADAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKV 120
           L+AD  QFADGLAENVA QVLA+A  YSHILAPATAYGKNILPRVAA+LDV QIS+ITKV
Sbjct: 58  LVADGAQFADGLAENVAAQVLALAAGYSHILAPATAYGKNILPRVAARLDVAQISEITKV 117

Query: 121 ESADTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSF 180
            SADTFERP YAGNAIATVQS D IKVITVRTT FD AA GGSA VE++ AVADSGKSSF
Sbjct: 118 VSADTFERPFYAGNAIATVQSSDAIKVITVRTTTFDAAAAGGSATVENVTAVADSGKSSF 177

Query: 181 VGREVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPN 240
           V RE+A S RPELTAAKI+VSGGRGMGS ESFKILEPLAD+L AAMGASRAAVDAGYVPN
Sbjct: 178 VSRELATSARPELTAAKIVVSGGRGMGSEESFKILEPLADRLGAAMGASRAAVDAGYVPN 237

Query: 241 DWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDL 300
           DWQVGQTGKIVAP LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFSVADYG+VGDL
Sbjct: 238 DWQVGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFSVADYGIVGDL 297

Query: 301 FEVVPELVKQLG 312
           FEVVP+LVK+LG
Sbjct: 298 FEVVPQLVKELG 309


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 543,502
Number of extensions: 21420
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 230
Effective length of database: 730,157
Effective search space: 167936110
Effective search space used: 167936110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)