BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1342.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093870|ref|YP_001098945.1| electron transfer flavoprotein ...   411   e-116

>gi|134093870|ref|YP_001098945.1| electron transfer flavoprotein
           subunit beta [Herminiimonas arsenicoxydans]
          Length = 249

 Score =  411 bits (1057), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/251 (83%), Positives = 226/251 (90%), Gaps = 2/251 (0%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA 60
           MKVLVPVKRVVDYNVKVRVKSD SGVDIANVKMSMNPFDEIAVEEA RLKE GK TE+IA
Sbjct: 1   MKVLVPVKRVVDYNVKVRVKSDQSGVDIANVKMSMNPFDEIAVEEATRLKEAGKATEIIA 60

Query: 61  VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ 120
           VS G+ Q QETLRTAMAIGADRGIL E   DVELQPLAVAK+LKA+A+KEQPQLIILGKQ
Sbjct: 61  VSCGILQSQETLRTAMAIGADRGILVE--TDVELQPLAVAKLLKAIADKEQPQLIILGKQ 118

Query: 121 AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL 180
           AIDDD NQTGQMLAALL WPQAT+ASKV ++  KV VTREVDGGLE ++LTLPAIITTDL
Sbjct: 119 AIDDDANQTGQMLAALLDWPQATYASKVEVDGDKVKVTREVDGGLEIVSLTLPAIITTDL 178

Query: 181 RLNEPRYVTLPNIMKAKKKQLDTVKPDELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240
           RLNEPRYVTLPNIMKAKKK LD +KP +LGVDV PR+KTLKV+EP KRSAG+ VPDVATL
Sbjct: 179 RLNEPRYVTLPNIMKAKKKTLDNIKPADLGVDVTPRLKTLKVSEPPKRSAGIIVPDVATL 238

Query: 241 VAKLKNEAKVI 251
           V KL+NEAKVI
Sbjct: 239 VEKLRNEAKVI 249


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 406,931
Number of extensions: 15161
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)