BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1341.p (319 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 241 2e-65 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 159 2e-40 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 126 1e-30 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 112 3e-26 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 98 6e-22 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 241 bits (616), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/322 (42%), Positives = 202/322 (62%), Gaps = 9/322 (2%) Query: 1 MKQRVVVYKKLPEHLVQRLQAQFEL--TLFDRITEDNRADFLAALKMADGMIGTSL-PIT 57 MKQ+++V + +++RLQ QFE+ DRI + A+ ++ DG+I TS ++ Sbjct: 1 MKQKILVARATFPDVIERLQQQFEVESNQEDRIF--SPAELHEKMQGKDGVIITSSEKLS 58 Query: 58 NAMLDGAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATARR 117 ++ P+LK ++VG +N D+ + G+M+ +TP VL E TAD + L++A ARR Sbjct: 59 GEVITANPQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYAWTLLMANARR 118 Query: 118 VVELADYVKAGRWKGSIGEAQFGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSILYHN- 176 E Y++AG+WK + G +VHG TLG++GMGRIG A+ARR+ GF M ++YHN Sbjct: 119 TSESEHYLRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQAIARRSM-GFDMQVIYHNR 177 Query: 177 TRPNPEAEAEL-GARYVSRDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAIFINA 235 +R P+ EA ARYVS++ LL AD + L+LP + T + GA E LMK +A +N Sbjct: 178 SRLTPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTATLVNI 237 Query: 236 SRGRIVDETALIAALQENTIYGAGLDVFEVEPLPVSSPLLRLPNVVALPHIGSATHETRL 295 +RG IVD+ ALIAAL+E+ I AGLDV+E EP + L L NVV PHIGSA+ +TR Sbjct: 238 ARGGIVDDVALIAALREHRIASAGLDVYENEP-ALHPDFLTLSNVVLTPHIGSASEKTRR 296 Query: 296 AMAELAVANLIAGLRGEPVPHL 317 AM++ A N++A L G+ P+L Sbjct: 297 AMSDCASLNMVAALSGQRPPNL 318 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 170/323 (52%), Gaps = 14/323 (4%) Query: 1 MKQRVVVYKKLPEHLVQRLQAQFELTLFDRITEDNRADFLAALKMADGMIGTSLP--ITN 58 MK ++V+ + +V+ L + E+ D + R + L K AD ++ +P + + Sbjct: 1 MKPKIVITHWVHPEIVEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMAF-MPDSVDD 59 Query: 59 AMLDGAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATARRV 118 + L P+LKI G DNFD+D +RG+ P +LT TA+ L+L R V Sbjct: 60 SFLAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHV 119 Query: 119 VELADYVKAGRWKGSIGEAQFGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSILYHNTR 178 + D+V++G + G + +G + G T+G+IGMGR+G A+A+R GF M+ +Y ++ Sbjct: 120 MAGDDHVRSGTFHGWRPKL-YGAGLAGSTIGIIGMGRVGKAIAKRLS-GFEMNAVYCDSV 177 Query: 179 P-NPEAEAELGARYVSRDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAIFINASR 237 P NP E AR VS D LL+ +DFV MLP+T T + A M+R + +N SR Sbjct: 178 PLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSR 237 Query: 238 GRIVDETALIAALQENTIYGAGLDVFEVEPL-----PVSSPLLRLPN---VVALPHIGSA 289 G +VDE A++ AL + + G DVFE+E P++ P L N + PH+GS Sbjct: 238 GSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSG 297 Query: 290 THETRLAMAELAVANLIAGLRGE 312 + RL + + +++ L G+ Sbjct: 298 VKKVRLEIERYSAHSILQALAGQ 320 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 146/300 (48%), Gaps = 7/300 (2%) Query: 4 RVVVYKKLPEHLVQRLQAQFELTLFDRITEDNRADFLAALKMADGMI-GTSLPITNAMLD 62 R+V+ + + + V L + FE T + D+R LA L D +I + A+LD Sbjct: 10 RIVITEFMDDTAVALLASTFETT-YKPALVDDRPALLAMLGNVDALIVRNRTKVDIALLD 68 Query: 63 GAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATARRVVELA 122 AP+L++ + VG+DN D+D + RG+ + G A A+ + +A R + Sbjct: 69 AAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATGANAGAVAEYVIGTAMALLREAYTRS 128 Query: 123 DYVKAGRWKGSIGEAQFGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSILYHNTRPNPE 182 AG W + G + GKTLGLIG G IG AR A+ G++++ H+ P+ Sbjct: 129 AETAAGTWPRT--ALSNGREIAGKTLGLIGFGGIGQLTARLAQ-ALGVTVIAHDPLLAPD 185 Query: 183 AE--AELGARYVSRDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAIFINASRGRI 240 A + G +L QAD V L +PLT T + GA MK A+ IN SRG I Sbjct: 186 AAIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLIGADALARMKPDAVLINTSRGEI 245 Query: 241 VDETALIAALQENTIYGAGLDVFEVEPLPVSSPLLRLPNVVALPHIGSATHETRLAMAEL 300 VDE AL AL + GA +DVF EPL + L P V+ PHI T E+ ++ L Sbjct: 246 VDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVILTPHIAGVTTESNTRVSAL 305 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 112/216 (51%), Gaps = 5/216 (2%) Query: 102 ATADTIFALILATARRVVELADYVKAGRWK-GSIGEAQ--FGVNVHGKTLGLIGMGRIGS 158 A A+ +ALI+A R++ + +K G W+ S+ A G + G+TLG+ G GRIG Sbjct: 104 APAELTWALIMAAMRKLPQYVGNLKDGLWQIASLSSAHNTLGAVLKGRTLGIWGYGRIGR 163 Query: 159 AVARRARHGFGMSILYHNTRPNPEAEAELGARYVS-RDALLSQADFVCLMLPLTPATERM 217 VA + FGM +L + A + G + S R+ S AD + L L L AT + Sbjct: 164 MVAGYGQ-AFGMKVLVWGRDASRAAAVQDGYQAASSREEFFSTADVLSLHLRLNDATRGI 222 Query: 218 FGAREFGLMKRSAIFINASRGRIVDETALIAALQENTIYGAGLDVFEVEPLPVSSPLLRL 277 A + MK SA+F+N SR +V AL AL++ A LDVFE EPL +S LLR+ Sbjct: 223 VTASDLAHMKSSALFVNTSRAELVASDALQTALEQGRPGYAALDVFESEPLAPTSSLLRM 282 Query: 278 PNVVALPHIGSATHETRLAMAELAVANLIAGLRGEP 313 NV+A PH+G ++ A N++A G P Sbjct: 283 ENVLASPHLGYVEKDSYELYFRSAFENIVAFANGAP 318 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 97.8 bits (242), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 13/270 (4%) Query: 37 ADFLAALKMADGMIGTSLPITNAMLDG-----APRLKIASTISVGVDNFDLDYFRQRGLM 91 AD + ++ D I S P A + A +LK+ T +G D+ DL+ + + Sbjct: 80 ADSVLDKELHDAEIIISQPFWPAYMTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNIT 139 Query: 92 LAHTPGVLTEATADTIFALILATARRVVELADYVKAGRWKGSIGEA-QFGVNVHGKTLGL 150 +A + + A+ + +IL+ R + V G W +I + ++ ++G Sbjct: 140 VAEVTYCNSHSVAEHVLMMILSQVRNYIPSYKQVIDGGW--NIADCVSRSYDLEAMSVGT 197 Query: 151 IGMGRIGSAVARRARHGFGMSILYHNTRPNPEA-EAELGARYVSR-DALLSQADFVCLML 208 + GRIG V R H F + + Y + P A E EL Y S ++L D V L Sbjct: 198 VAAGRIGLRVLRLL-HPFDVKLHYMDRHRLPTAVEKELNLTYHSTLESLTKVCDVVTLNC 256 Query: 209 PLTPATERMFGAREFGLMKRSAIFINASRGRIVDETALIAALQENTIYGAGLDVFEVEPL 268 PL P TE M + KR A IN +RG++ D A++AAL+ + G DV+ +P Sbjct: 257 PLHPETEHMINEKTLKNFKRGAYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPA 316 Query: 269 PVSSPLLRLPNVVALPHIG--SATHETRLA 296 P + P +P+ PHI S T +TR A Sbjct: 317 PKNHPWRTMPHHGMTPHISGTSLTAQTRYA 346 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 561,890 Number of extensions: 21788 Number of successful extensions: 69 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 5 Length of query: 319 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 237 Effective length of database: 730,157 Effective search space: 173047209 Effective search space used: 173047209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)