BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1338.p (244 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 237 4e-64 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 166 8e-43 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 156 1e-39 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 148 2e-37 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 143 8e-36 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 237 bits (605), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/236 (50%), Positives = 162/236 (68%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITV 62 ++E+ N++K +GS QVLN + SV +G VV V G SGSGKST+++ +NGLE GSITV Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 63 AGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIKV 122 G + + +L LR +GMVFQ++ LFPHL++ EN+ L V + E A +K Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 123 LQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L +VGL ++D +P QLSGGQQQRVAIAR+LAM+P MLFDE TSALDPE+ EVL VM Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFI 238 LA+ GMTM++VTHEM FAR+VA+ +FM QG + E +EFF ++ A+ F+ Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFL 236 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 166 bits (421), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 10/241 (4%) Query: 4 VEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITVA 63 +E+ NI K+FG+ LN +SL G++ A++G SG GK+T+LR I GLE D G + + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARAT----A 119 G + +H + VG VFQHY LF H+TV ENI R V+ AT + + Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLR-VRPAATRPSESVIKEKV 117 Query: 120 IKVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLK 179 K+L+ V LD D YP QLSGGQ+QR+A+AR+LA+EP+V+L DE ALD ++ E+ + Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 180 VMEELARG-GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFI 238 + L +T + VTH+ E A VAD V M++G V + ++ + +P +P F+ Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 239 G 239 G Sbjct: 238 G 238 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 156 bits (394), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 143/245 (58%), Gaps = 11/245 (4%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGL-ETIDG---- 57 ++++ ++ +G Q L I+L+V RGQV+A IG SG GKST+LRC N + + +D Sbjct: 34 VLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDLVDSCRVE 93 Query: 58 GSITVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARA 117 G + V G + + ++ ELR+ VGMVFQ N FP T+ EN+ R++ Sbjct: 94 GEVIVDGRNVYERSVNVAELRRRVGMVFQKPNPFPK-TIYENVAYGLRLLGVKNRAQLDE 152 Query: 118 TAIKVLQQVGL-DHKRDAYPEQ---LSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPEL 173 + L+Q L D +D LSGGQQQR+ IAR++A+EP+V+L DE SALDP Sbjct: 153 VVERSLRQAALWDEVKDRLHSSGLSLSGGQQQRLVIARAIALEPEVLLLDEPCSALDPIA 212 Query: 174 TAEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPE 233 TA++ ++++L + T+++VTH M+ A RV+D T FM GK+ E +++ F P + Sbjct: 213 TAKIEDLLDDL-KQKYTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVTDQMFTQPTNKQ 271 Query: 234 AKQFI 238 +I Sbjct: 272 TMDYI 276 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 26/238 (10%) Query: 16 NQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITVAGHKLTNKHEHLI 75 +++++ +S +++RGQ+ ++G+SG GK+T+LR I G E + GSIT+ G +++N H Sbjct: 31 HEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTAT 90 Query: 76 ELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIKVLQQVGLDHKRDAY 135 + +G+VFQ Y LFPHL+V +N+ ++K A +A +L VGL + + Sbjct: 91 PETRQIGVVFQDYALFPHLSVADNVGFG---LRKLAAPERQARIAALLTLVGLASQGKKF 147 Query: 136 PEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPE----LTAEVLKVMEELARGGMTM 191 P +LSGGQQQRVA+AR+LA +P ++L DE S LD + L +EV +++E+ G T Sbjct: 148 PHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEV---GTTA 204 Query: 192 LLVTHEMEFARRVADLTVFMHQGKV--WEA------RPSEEFFADPQTPEAKQFIGAG 241 +LVTH+ A +AD M G + W++ RP+ F AD FIG G Sbjct: 205 VLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVAD--------FIGLG 254 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 143 bits (361), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 12/247 (4%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSI 60 M ++EI N+T+RFG N V++ ISLS+E G+ ++G SG GK+T+LR I G + D G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 TVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAI 120 + G LT ++ V VFQ+Y LFPH+TV NI P + T + Sbjct: 61 LLDGVDLTGVPPE----QRVVRTVFQNYALFPHMTVAGNIAF-PLEMANTPKSEIKQKVD 115 Query: 121 KVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPEL----TAE 176 + L+ V L YP +LSGGQ+QRV+IAR+L P+++L DE SALD +L E Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 177 VLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQ 236 ++ + +E+ G+T + VTH+ A ++ M++G + + ++ P++ Sbjct: 176 LINLQKEV---GITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVAD 232 Query: 237 FIGAGSI 243 FIG ++ Sbjct: 233 FIGTCNL 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 427,637 Number of extensions: 15728 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 48 Length of query: 244 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 165 Effective length of database: 740,042 Effective search space: 122106930 Effective search space used: 122106930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)