BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1337.p
         (216 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    84   4e-18
gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    83   1e-17

>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 84.3 bits (207), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 13  LLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLS 72
           LL    WTL ++  A+I   + G ++ + RT+    L  L   Y+++ +  P+L+  F+ 
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVW 80

Query: 73  FY-------GLAIFGYKLPP----MVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121
           ++        +  +   L P     V A I +  ++S+ + E  R  I+++P  Q  A  
Sbjct: 81  YFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGY 140

Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181
           AL +T  Q  R+V+LP A RI +PP    L+ ++KNT++A  IGLVEL    + +   TF
Sbjct: 141 ALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTF 200

Query: 182 QPFLVFPIVAAIYFVFCYPLSRFAFVLERK 211
           + F  F     +Y V     +R   ++ER+
Sbjct: 201 RYFEAFGAATLMYVVIAMLANRVMALVERR 230


>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 82.8 bits (203), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 109/210 (51%), Gaps = 11/210 (5%)

Query: 12  FLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFL 71
           +LL   ++TL L+  A IGG + G ++AL R S    L  L+A Y+ +++  P+L+++F 
Sbjct: 15  YLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIFW 74

Query: 72  SFYGL------AIFGYKLPPMVAAT----IAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121
            FY L       I G + P  + A     I   ++ +AY  EI R  I+++   Q  A+ 
Sbjct: 75  -FYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAAY 133

Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181
           AL ++  Q +R V+LPQA R  LP  +   + + ++ S+ S++ + +   A   ++    
Sbjct: 134 ALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASVKIAQRDS 193

Query: 182 QPFLVFPIVAAIYFVFCYPLSRFAFVLERK 211
           +   ++  VA +YFV  + LS     L+++
Sbjct: 194 RVVEMYLFVAIVYFVLSFALSSMVKQLQKR 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 345,957
Number of extensions: 11924
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 138
Effective length of database: 743,337
Effective search space: 102580506
Effective search space used: 102580506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)