BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1336.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    76   1e-15
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    69   3e-13

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 76.3 bits (186), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 4   DFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSYVEL 63
           D  F  I +    LL G   T++L+  + I G+  G   A+  +   +       +YV L
Sbjct: 3   DLDFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNL 62

Query: 64  IRSTPFLVQLFIIFFGLPSI---------GVQVDANIAALVAMTVNLGAYSTEIVRAGMM 114
           +RS P L+ +F  +F +P +          VQ+ A+ +A +   +   AY  EI+RAG+ 
Sbjct: 63  MRSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQ 122

Query: 115 AIHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELT 174
           +I   Q+ AA AL ++  Q +R VVL  A   + P L +Q  ++    S+VS ++  +  
Sbjct: 123 SISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFV 182

Query: 175 ATANLLDAETFRSFEIYLVVMVLYILLA 202
             +  +     R  E+YL V ++Y +L+
Sbjct: 183 GASVKIAQRDSRVVEMYLFVAIVYFVLS 210


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 68.6 bits (166), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 14/179 (7%)

Query: 40  IFGAIISIHGSRPARLAVT---SYVELIRSTPFLVQLFIIFFGLPSI-------GVQVDA 89
           + G++I I  +   R  V    +YVEL R+ P LVQ F+ +F +P +        + +D 
Sbjct: 41  VLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVWYFVIPGLVPAVKTWVITLDP 100

Query: 90  NIAALVAMTVNLGAYST----EIVRAGMMAIHPSQIEAAQALAMTRWQVIRHVVLTPALE 145
            I   V   + LG +++    E VR+G+ ++   Q  A  AL +T  Q  R V+L  A  
Sbjct: 101 TIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNAGYALGLTGMQTYRFVLLPMAYR 160

Query: 146 KVYPALASQFTLMMLASSIVSAISAEELTATANLLDAETFRSFEIYLVVMVLYILLALL 204
            + P L S+   ++  +++  +I   EL      +   TFR FE +    ++Y+++A+L
Sbjct: 161 IIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTFRYFEAFGAATLMYVVIAML 219


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.333    0.141    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 296,741
Number of extensions: 9987
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 127 (53.5 bits)