BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1335.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...    64   6e-12

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score = 64.3 bits (155), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 19/270 (7%)

Query: 12  FLALTLAAACAVATAASASAQSIAELTKK----GKITIGVVSGTPPFGSVDAKGVPIGYD 67
            L   + AA       +A AQ ++   KK    G+ITIG    + PF  +D K  PIGY 
Sbjct: 6   LLKTLIGAAMMSTLMTAAQAQELSGTLKKIKETGEITIGYRESSIPFSFLDDKQQPIGYA 65

Query: 68  VDVA-NLIG------KYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLF 120
           +D+   ++G      K   L V++ P+    RIP L +G +D+   +   +  R + V F
Sbjct: 66  MDLCMKIVGTVKADLKLPALKVKLQPVTSSNRIPLLNNGTIDLECGSTTNSIARQEQVAF 125

Query: 121 TIPYSGFELSIVGPVGSHYKKLDDLVKKKVGVSRGSTNDTALTRLAPAGTVLVR--FEDD 178
              Y    ++      S+   +  L  K V  + G+T+   L     AG   V+  +  D
Sbjct: 126 GPTYFVINVTAAVKKSSNINTIAQLDGKTVSTTSGTTSVPLLKAYKKAGNAQVKEIYGKD 185

Query: 179 STVTQALLSNQVDAISIPNT--MANEIVKSRGQGKIEVKFPYSV--QPNSMTVRKGSYEL 234
                 L+++   A  + +   +A +I  ++  G  ++  P S+  +P SM +RKG  + 
Sbjct: 186 HAEAFLLMADDRAAAFVMDDILLAGQIANAKRPGDYKI-LPESLRQEPYSMMLRKGDPQF 244

Query: 235 QQWLNNFIYYVKLNGELDAISRKW-AGPLP 263
           +  ++  I  V  +GE+D I  KW   P+P
Sbjct: 245 KALVDKSITAVMQSGEIDKIYAKWFTTPIP 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,465
Number of extensions: 17716
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)