BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1333.p (703 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 298 5e-82 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 155 7e-39 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 104 1e-23 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 298 bits (763), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 225/724 (31%), Positives = 353/724 (48%), Gaps = 60/724 (8%) Query: 12 LLAFSAGPVLAQTSASDNSTTAPGAAQLPTVDVVADGISDTK------FKATQSQ-VNKS 64 ++ + G L + AS N ++AP LP V+V G+ +T ++AT+S K+ Sbjct: 30 VVGLNGGSSLQASPASQNESSAPAVTTLPAVNV--SGVQETATGPVIGYRATRSSTATKT 87 Query: 65 STPLSETPQSISVVTRSMLDSQQAVSLSDALKNVPGVVAQQYGRRGW-DDIIIRGQVSSD 123 T L+ET Q+++VVTR + Q A +L DAL GV + YG D +++RG +S Sbjct: 88 DTSLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRG--ASP 145 Query: 124 SLYLDGLRTTA---SSRVAEQLFGLQQVEVLKGPGSLLYGLVLPGGLVNMVSKRPQGTDF 180 +Y+DGLR +S F L+++EVL+GP ++ YG GG+VN+VSKRPQ Sbjct: 146 DVYIDGLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQ 205 Query: 181 ANVDVTVGSYDFYQTTVDLNKSLSENGKQAFRINGLISNSNDATNYVWFKNRYIAPSLSL 240 V V +G++ Q D+ L+E+ + +R+ + N++ +YV IAPSL+ Sbjct: 206 GEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRTLIAPSLTW 265 Query: 241 DLGARTDFTILTSYQ-ERGYVRQQGLPLSGSIRPNINGALPRSLFIGEPGARPYSANETR 299 T T+ YQ +R Q LP +G + PN+NG +P S FIGEPG R Y + Sbjct: 266 KPNGVTSLTLQGLYQRDRTGSTSQFLPWAGMLTPNVNGMIPTSRFIGEPGDR-YDTDRQS 324 Query: 300 IGYALTHRFDDGWTLNHNLRYQQFQMSGQVVTNTALS-----STG------------RNL 342 +GY H+ +D WT N RY ++ T+ A S STG R + Sbjct: 325 LGYLFEHQLNDNWTFRQNFRYAVNEVD--YFTHYADSFSTDPSTGLPGGWAIDPVNQRLI 382 Query: 343 TRAGTDQTFEGPTFSVDTNVQRGFNTDFGKHEITLGSDYLNSREDNRSYTCGIAALNVYQ 402 R D + ++D ++Q T +H++ G DY + D +S G+ ++VY Sbjct: 383 GRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDRQS-GFGMDTIDVYA 441 Query: 403 PVYGARLNCPARPTTLTSTSVRDTGLYARDKITLDQRWQLLTGLRYDRASTYATNQRNGV 462 PVYG A + R GLY +D+I + + W + GLR+DR N Sbjct: 442 PVYGN--GVVATLADDPQSVQRQIGLYLQDQIKIGKNWIVSAGLRHDR-----VNNALAG 494 Query: 463 HTDNPSSATTGSAALMYELLQGVRPYISYATSFYPNSGTDVGGSTFKPETGKQWEAGVKF 522 D S ATT +MY L G PY+SY+ SF P +GT+ FKP G+Q E GVK+ Sbjct: 495 SEDEESRATTKRVGVMYLLENGWSPYVSYSESFTPVAGTNAYDQRFKPVRGEQIEGGVKY 554 Query: 523 DLDEGRTNLNVAVFDLRRRNVLVSDPNNIGFNIAVGEQRSQGGEISVSSDLRNGVSLNAG 582 G + A++ + +N +DP+N I VG+ +++G E+ + + + + A Sbjct: 555 MPVNGHSQFTAAIWKIDEKNKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAH 614 Query: 583 YSYTAAIVTDDGGQPSTTVGQWLNNVPRHSFTSSARYRFK-GELNGWEVNGGVRGQSMVR 641 Y+Y T + + L+ VPRH + ++RF G ++G+ + G R S R Sbjct: 615 YNY-------------TDLDEQLDEVPRHQAAAWGKWRFSIGGVSGFALGAGARYMSSFR 661 Query: 642 T-YGYTLPGYVVGDAGVAYNAERWRAALNVKNVFNTHYYTGGLQNA-VALGDDRTILLTL 699 T P + DA ++++ WR ALNV N+ + Y L G R+ +LT Sbjct: 662 DGVAPTTPSVTLLDALLSWDTMNWRYALNVNNLTDKVYNATCLSRGDCWYGARRSAVLTA 721 Query: 700 GYRY 703 Y++ Sbjct: 722 TYKF 725 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 155 bits (392), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 181/669 (27%), Positives = 299/669 (44%), Gaps = 101/669 (15%) Query: 39 LPTVDVVADGISDTKFKATQSQVNKSSTPLSETPQSISVVTRSMLDSQQAVSLSDALKNV 98 LP V+V G +++ +KA K + PL T Q+I+V+ + ++ Q +L++AL+N Sbjct: 42 LPEVEV--HGTTES-YKADTVSSPKFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNT 98 Query: 99 PGVVAQQYGRRG----WDDIIIRGQVSSDSLYLDGLRTTASSRVAEQLFGLQQVEVLKGP 154 PGV G G D I +RG +S S+++DG+R S ++ +F ++Q+EV KGP Sbjct: 99 PGVGTFSLGENGNTNTGDAIYMRGFDTSSSIFVDGVRDLGS--ISRDIFNIEQIEVTKGP 156 Query: 155 GSLLYGLVLPGGLVNMVSKRPQGTDFANVDVTVGSYDFYQTTVDLNKSLSENGKQAFRIN 214 G P G +N+ +K+P + + V+VGS D+ + T DLNK L +G AFRIN Sbjct: 157 AGADTGRGSPTGSINLSTKQPTMKEAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRIN 216 Query: 215 GLISNSNDATNYVWFKNRY-IAPSLSLDLGARTDFTILTSYQERGYVRQQGLP---LSGS 270 L +S A + +R IA + + L T + + ++ + G+P L G Sbjct: 217 LLKDDSGVAGRDIVKNDRQGIAAAFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGY 276 Query: 271 IRPNINGALPRSL--FIGEPGARPYSANETRIG----YALTHRFDD-------------- 310 P + A P + + P ARP+ +R+ Y FDD Sbjct: 277 SSP-VQAANPAATPPVVAIP-ARPFLNGASRVNSSNFYGTVGDFDDVTADMLTARVEHDI 334 Query: 311 --GWTLNHNLRY----QQFQMSG------QVVTNTALSSTGRNLTRAG--TDQTFEGPTF 356 L + R+ Q + ++G ++T T L R+ DQT E F Sbjct: 335 SPDVKLQNTTRFGKTSQNYLLTGFMGSAPNLLTPNPADPTTWTLARSSQMKDQTNE--IF 392 Query: 357 SVDTNVQRGFNTDFGKHEITLGSDYLNSREDNRSYT--CGIAALNVYQP----------V 404 S TN+ F+T KH + G + + ++ + Y I+A N+Y P Sbjct: 393 SNQTNLTAKFDTGAVKHSLVTGVELSSEKQRSLGYAGLGTISAANLYNPNPYLVRTGYNP 452 Query: 405 YGARLNCPARPTTLTSTSVRDTGLYARDKITLDQRWQLLTGLRYDRAST-YATNQRNGVH 463 G N R TL+ +Y D + L +WQ+ G+R D T Y ++ N + Sbjct: 453 VGNGTNSEGRTNTLS--------VYLFDTLELSPQWQINGGVRVDHYDTKYESSTLNVRN 504 Query: 464 TDNPSSATTGSAAL--MYELLQGVRPYISYATSFYPNSGTDVGGST---------FKPET 512 S T + L +Y+ + Y+SYATS P G++ S+ + P+ Sbjct: 505 ATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQE 564 Query: 513 GKQWEAGVKFDLDEGRTNLNVAVFDLRRRNVLVSDPNNIGFNIAVGEQRSQGGEISVSSD 572 + E G K+DL + R L A++ +N + + + GF G++R +G E+ V + Sbjct: 565 TRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATD-GFT-QTGKKRVEGVELGVVGE 622 Query: 573 LRNGVSLNAGYS------YTAAIVTDDGGQPSTTVGQWLNNVPRHSFTSSARYRFKGELN 626 + + ++AGY+ AIV DG T G L+ P+ +FT+ Y+ G Sbjct: 623 ITSAWQVSAGYTRMRTDVTAGAIVNQDG-----TSG--LSYTPKQAFTAWTTYKLPG--- 672 Query: 627 GWEVNGGVR 635 G+ + GG R Sbjct: 673 GFTIGGGAR 681 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 137/594 (23%), Positives = 237/594 (39%), Gaps = 42/594 (7%) Query: 39 LPTVDVVADGISDTKFKATQSQVNKSSTPLSETPQSISVVTRSMLDSQQAVSLSDALKNV 98 LP V V++D SD S S PL ETP SISV+T + + S +DA+K Sbjct: 34 LPEVVVMSDSESD-GIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVK-Y 91 Query: 99 PGVVAQQYGRRGWDDII-IRG-QVSSDSLY-LDGLRTTASSRVAEQLFGLQQVEVLKGPG 155 V Y G D IRG + S Y DG+ A S + + ++ EVLKG Sbjct: 92 DASVQNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPME--NKERFEVLKGLA 149 Query: 156 SLLYGLVLPGGLVNMVSKRPQGTDFANVDVTVGSYDFYQTTVDLNKSLSENGKQAFRING 215 L G+ GG++N V KRP +V + VDL S++ + +RIN Sbjct: 150 GLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGR-SDDKRFGYRIN- 207 Query: 216 LISNSNDATNYVWFKN---RYIAPSLSLDLGARTDFTILTSYQERGYVRQQGLPLSGSIR 272 + D +YV N ++++ + L + I Y + + G L G + Sbjct: 208 --AAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLSVPGFQLLGPAQ 265 Query: 273 PNINGALPRSLFIGEPGARPYSANETRIGYALTHRFDDGWTLNHNLRYQQFQMSGQVVTN 332 G +++ + + P + + +G + ++ W + L+ +F++ Sbjct: 266 RIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQW--HTTLQANKFELRRDDAVA 323 Query: 333 TALSSTGRNLTRA-GTDQTF----------EGPTFSVDTNVQRGFNTDFGKHEITLGSDY 381 A L+ D TF + S +Q FN KH++TLG Sbjct: 324 LASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGMST 383 Query: 382 LNSREDNRSYTCGIAAL-NVYQPVYGARLNCPARPTTLTSTSVRDTGLYARDKITLDQRW 440 +N R++ ++ A ++Y P Y P P +L + ++ +D +TL+ ++ Sbjct: 384 MNRRDNYANFLFESAGTGSIYYPKYNPLTLGPTNPVSLRRKD-EERSVFVQDVLTLNDKF 442 Query: 441 QLLTGLRYDRASTYATNQRNGVHTDNPSSATTGSAALMYELLQGVRPYISYATSFYPNSG 500 +L G+RY + G+ + AL++ Y +Y+ P + Sbjct: 443 KLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQGLEPGAE 502 Query: 501 TDVG----GSTFKPETGKQWEAGVKFDLDEGRTNLNVAVFDLRRRNVLVSDPNNIGFN-I 555 G + P +Q E G+K DL + ++ A+F + R N S G N + Sbjct: 503 VPSGLVNEETVLDPNKSRQVEIGIKADLSQD-ISVAAALFQIHRDNNYTS-----GLNYV 556 Query: 556 AVGEQRSQGGEISVSSDLRNGVSLNAGYSYTAAIVTDDGGQPSTTVGQWLNNVP 609 G++ +G E+S ++L A + A + G + G+ + NVP Sbjct: 557 TAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGD--ARVEGKRIGNVP 608 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,310,446 Number of extensions: 54550 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 3 Length of query: 703 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 615 Effective length of database: 710,387 Effective search space: 436888005 Effective search space used: 436888005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)