BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1329.p (265 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 200 5e-53 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 159 2e-40 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 157 4e-40 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 154 5e-39 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 152 2e-38 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 200 bits (509), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 118/253 (46%), Positives = 153/253 (60%), Gaps = 13/253 (5%) Query: 3 HGSSVSIKRVGLSI----GKHEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEV 58 +G + I+ +S G + I+L + GEFI L+G SGCGKSTLLN IAG + Sbjct: 5 NGKFIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQS 64 Query: 59 SGEISIGGQR-IKGPGLDRGVVFQSSEALFPWLTVRENVEYGL-----RLRGIASAERRT 112 +G + + G R I GP +R VVFQ+ +L PWLT ENV + ++ G A RT Sbjct: 65 TGGMLLCGNREIAGPSPERAVVFQN-HSLLPWLTCYENVYLAVERVFGKVEGKAKLRART 123 Query: 113 AAERYVSLVGLRHAIDKFPGELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVL 172 A +SLVGL HA K P E+SGGM+QR IAR L +P V+LMDEPFGALDA TR L Sbjct: 124 RAA--LSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHL 181 Query: 173 QSELERIWKSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIETVDLPHPRDPADP 232 Q EL +I +TG T+V VTHD+ EA+LL+D++V +T GP A I I V L HPR+ Sbjct: 182 QDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAHPRERVAL 241 Query: 233 ACMALYARIRDDI 245 A A Y+ R + Sbjct: 242 AKDAQYSEYRTAV 254 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 126/210 (60%), Gaps = 13/210 (6%) Query: 11 RVGLSIGK--HEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVS-GEISIGGQ 67 RVG +G+ HEI+ + ++ G+ CLLG SGCGK+T+L AIAGF+ ++ G I++GG+ Sbjct: 21 RVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGK 80 Query: 68 RIKGPGLDR-------GVVFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSL 120 I GVVFQ ALFP L+V +NV +GLR +A+ ER+ ++L Sbjct: 81 EISNAHFTATPETRQIGVVFQDY-ALFPHLSVADNVGFGLR--KLAAPERQARIAALLTL 137 Query: 121 VGLRHAIDKFPGELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIW 180 VGL KFP ELSGG +QR +AR L QP ++L+DEPF LD RE L SE+ I Sbjct: 138 VGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDIL 197 Query: 181 KSTGCTIVFVTHDIWEAILLADRVVTMTAG 210 K G T V VTHD EA +AD++ M G Sbjct: 198 KEVGTTAVLVTHDQHEAFAIADQIGVMQDG 227 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 157 bits (398), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 25 IDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQ-EVSGEISIGGQRIKGPGLDRGVVFQSS 83 +D + + LLGPSGCGKSTLL A+ G+ GE+ + + I P DR +VFQ Sbjct: 31 VDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRLHDKVITKPWYDRMMVFQEF 90 Query: 84 EALFPWLTVRENVEYGLRLRG-IASAERRTAAERYVSLVGLRHAIDKFPGELSGGMRQRA 142 + L PW TV++NV + L G + E A Y+ V L D +P LSGGM+QR Sbjct: 91 DQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMYYIEKVNLSKFADHYPHMLSGGMKQRV 150 Query: 143 QIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWEAILLAD 202 IAR + +P ++LMDEP+ ALDA TR+ +Q EL ++W T T++FVTH I EA+ + + Sbjct: 151 AIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWDDTHFTVLFVTHSIAEAVKIGN 210 Query: 203 RVVTMTAGP 211 R++ ++ P Sbjct: 211 RILLLSPHP 219 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 154 bits (388), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 130/230 (56%), Gaps = 16/230 (6%) Query: 7 VSIKRVGLSIGKHEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEV-SGEISIG 65 + I+ + G + ++ I L I AGEF LLGPSGCGK+TLL IAGF E +G+I + Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 66 GQRIKG-PGLDRGV--VFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVG 122 G + G P R V VFQ+ ALFP +TV N+ + L + +E + + + V Sbjct: 64 GVDLTGVPPEQRVVRTVFQNY-ALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVR 122 Query: 123 LRHAIDKFPGELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKS 182 L ++P ELSGG RQR IAR LV +P ++L+DEP ALDAQ RE +Q EL + K Sbjct: 123 LTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKE 182 Query: 183 TGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIETVDLP-----HPR 227 G T V+VTHD EA+ L+ R+ M G IE +D P +PR Sbjct: 183 VGITFVYVTHDQAEALALSHRIAVMNKG------NIEQLDEPTRIYSYPR 226 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 126/212 (59%), Gaps = 6/212 (2%) Query: 21 IMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVS-GEISIGGQRIKGPGLDRGVV 79 ++ ++ + GE + LLG SG GKSTLL +AG G GQ I P +V Sbjct: 26 VLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQGTAKYRGQEIYSPVSGIAMV 85 Query: 80 FQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMR 139 FQS ALFPWLTV++NVE GL +G+A ER A+ + L+GL P ELSGGM+ Sbjct: 86 FQSF-ALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLIGLAGFGGALPRELSGGMK 144 Query: 140 QRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCT---IVFVTHDIWE 196 QR IAR LV P V+LMDE F ALD T E L+ ++ +W+ I+ V+H+I E Sbjct: 145 QRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEKRIPTKGILIVSHNIEE 204 Query: 197 AILLADRVVTMTAGPRAHIKTIETVDLPHPRD 228 A+++ADR++ +++ P I++ ++LP PR+ Sbjct: 205 AVMMADRILVLSSSP-GRIRSEIRINLPRPRN 235 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 507,116 Number of extensions: 20391 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 46 Length of query: 265 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 185 Effective length of database: 736,747 Effective search space: 136298195 Effective search space used: 136298195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)