BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1328.p
         (272 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...   115   2e-27
gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...    73   2e-14

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 138/248 (55%), Gaps = 17/248 (6%)

Query: 3   QLTQTATASASASATPSKLGSRVK--AARPFLISVIAIVGGLV----LWQLVSMTTSPLF 56
           +++ +   S  A+    K  +R    + RPF +SV+  + G++    +W+++S   S + 
Sbjct: 20  KVSDSVAKSIGATPVADKPATRAGMFSLRPFFMSVVPPIFGVLFLVLVWEIISAKNSGI- 78

Query: 57  LPSVSMTWSAALELISD-----GTLQQ----SVLASSCRILAGWGAGVVIGVPLGIFMGR 107
            PS ++T  +A++L +D     G   Q    ++LAS  R+  G+G   ++G+PLG  +GR
Sbjct: 79  -PSPAVTLKSAIDLFADPFYSNGPNDQGIGWNILASLKRVAVGFGLAALVGIPLGFMIGR 137

Query: 108 FEIVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQA 167
           F+ +  + +P I   + + P+A++ + ++     + + I  IF  +++ + +NT  GVQ 
Sbjct: 138 FKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIINTAVGVQR 197

Query: 168 VNPLRLRAAASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLG 227
           V    +  A  L    WK++T ++ PS +PYM+TG R+A+G ++L +V+AE+++   G+G
Sbjct: 198 VPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEMLTGGVGIG 257

Query: 228 ALIWTARN 235
             +W   N
Sbjct: 258 FWVWDEWN 265


>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 72.8 bits (177), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 43  VLWQLVS-MTTSPLFLPSVSMTWSAALELISDGTLQQSVLASSCRILAGWGAGVVIGVPL 101
           V+W++ + M  + L  P+ S    A +E +  G L   V  S   +L G+GAG+V+   L
Sbjct: 70  VIWEVYARMLNNTLLFPTFSSVVEALVEGVISGGLLGKVWFSIKILLMGYGAGLVLAALL 129

Query: 102 GIFMGRFEIVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNT 161
            +F     I R  L+     F  +P IA + L+++W G G  S + ++ ++ V+ V LNT
Sbjct: 130 TVFAITSRIGRDFLETLTSMFNPLPAIALLPLSLLWFGLGTGSLVFVLIHSVVWAVALNT 189

Query: 162 IAGVQAVNPLRLRAAASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVS 221
            +G Q+V+        + G    + +  +++P+  P ++TG +I    ++ T+++AE+V 
Sbjct: 190 HSGFQSVSTTLRMVGHNYGLSGLRYVFQILIPAAFPSILTGLKIGWAFAWRTLIAAELVF 249

Query: 222 AREGLGA----LIWTARNFSRIEWVFVGIIALGLLGYLFDR 258
                       I+  +N   I  VF G++ + ++G   + 
Sbjct: 250 GVSSGSGGLGWFIYENKNQLEIPSVFAGLLTVIMIGLFVEN 290


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 459,232
Number of extensions: 18080
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 192
Effective length of database: 736,747
Effective search space: 141455424
Effective search space used: 141455424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)