BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1326.p
         (282 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogena...    64   8e-12

>gi|134094017|ref|YP_001099092.1| putative haloacetate dehalogenase
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 63.9 bits (154), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 23/218 (10%)

Query: 12  FIQTTAG-PLHVASMGQGRPVLLLHQTPRSWDEYRDVLPLLGQAYWAIAIDTLGFGDSCK 70
            I T AG  +HV   G+G P+LLLH  P++   +  V P L   +  +  D  G+GDS K
Sbjct: 22  LIDTAAGVQIHVRVFGEGPPLLLLHGHPQTHAIWHRVAPTLAANFTLVLADLRGYGDSSK 81

Query: 71  PPLSA----HSIERWAQLALEVMDQLGISKAAVVGHHTGAATAMEIAAAAPERVAALVLS 126
           P   A    +S    A   L VM  LG  + AV+ H  GA  A  +A   P  V+ LV  
Sbjct: 82  PQGDAVHGNYSKRTMALDMLRVMQALGHERFAVLAHDRGARVAHRLAVDHPAAVSRLVTL 141

Query: 127 SCSYNDAAH-RSAHAGKRA------------IDDVVVRAD-GSHLQELWQRRQPYYPPGD 172
             +   A + +++ A  RA            + + ++ AD  ++++++  RR     P D
Sbjct: 142 DIAPTLAMYEQTSQAFARAYWHWFFLIQAAPLPERLIEADPAAYIRDVMGRRHAGLAPFD 201

Query: 173 TELLSRFMMDALKAGEMAAHGHMVVRNYVMEARIGLVH 210
              L+ +M    +A  +    H +  +Y   A I LVH
Sbjct: 202 PRALAEYM----RAMALPGAAHGLCEDYRASASIDLVH 235


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 560,926
Number of extensions: 22040
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 201
Effective length of database: 733,452
Effective search space: 147423852
Effective search space used: 147423852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)