BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1325.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate ph...    79   4e-16

>gi|134096419|ref|YP_001101494.1| carboxyphosphonoenolpyruvate
           phosphonomutase or methylisocitrate lyase [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score = 78.6 bits (192), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 24/246 (9%)

Query: 22  FVLPNPWDVGSAKMLASMGFKCLATTSSGYA-WSTGRP-EGEVSRDQTIAHLRQMVDATE 79
            ++P  ++  SA+++A +GF+ L  T +G      G P +G +  ++   H  ++ DA +
Sbjct: 22  LLVPGAFNALSARVIADLGFEALYITGAGVTNMYFGLPDQGFIGLNELADHTARIRDAVD 81

Query: 80  LPINADFESGFGATLEEVTESVRMAIDTGVAGLSIEDSTGSAALPLR----------SIA 129
           +PI  D ++GFG  L  V  ++R     G   + +ED       P R          S A
Sbjct: 82  IPIIVDADTGFGNALN-VRHTIRTLERAGADAVQLEDQVA----PKRCGHFNGKEVISCA 136

Query: 130 ESVERIRAAKLAIAESGEDVLLIGRAENFFVGQPDLDDALRRLKAYAEAGADCLYAPGIK 189
           E V +I AA    A S E +L++ R +   V     DDAL R   Y+EAGAD L+    +
Sbjct: 137 EMVGKIHAA--VDARSNEGMLIMARTDARSV--HGFDDALERAARYSEAGADILFVEATE 192

Query: 190 TAEQIKAVVAAV-APKPVNVLIGWPSEL-TLQDLEHLGVRRVSLGGALARAAWGCAQRAA 247
           TA++I+ +  A+  P+ VN++IG  + + +  +L  LG   V    A  + A    Q+A 
Sbjct: 193 TADEIRRLPQALDKPQLVNLVIGGKTPIFSADELSGLGYGIVLYANAALQGAVAGMQKAL 252

Query: 248 RTILND 253
            T+L D
Sbjct: 253 -TVLRD 257


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 466,969
Number of extensions: 17168
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)